Hello, An easy way to do this would be to download the *E. coli* proteome as a fasta file and search it using any text editor (if the motif has some variance then you can use regular expressions) - or a spreadsheet. Or BLAST the motif in the PDB limited to *E. coli* and set a high e-value (the higher the less information is in the motif). Then download the hits.
You can also use e.g. Geneious to find and annotate motifs in many sequences at once. Best of luck, Lukasz On Sun, 5 Sep 2021, 17:34 Cryo EM, <cryoemfa...@gmail.com> wrote: > Hi all, > > I want to search NCBI/PDB for all E.coli proteins with a specific sequence > motif. > Is there any server/software in which I can search and display all the > proteins in E.coli with this specific sequence motif? > Suggestions are highly appreciated. > > Thanks! > > > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
