Looks like the density manipulation/carving tools might be useful. Thx, BR
From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> On Behalf Of Jurgen Bosch Sent: Thursday, May 28, 2020 11:29 To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] visual mask editor - why Give this a shot: https://www.eyesopen.com/afitt At least in Vida from the same suite of programs, you can select such a blob as you describe and export it in a useful way. Jürgen _______________________________________________ Jürgen Bosch, Ph.D. Division of Pediatric Pulmonology and Allergy/Immunology Case Western Reserve University 2109 Adelbert Rd, BRB 835 Cleveland, OH 44106 Phone: 216.368.7565 Fax: 216.368.4223 https://www.linkedin.com/in/jubosch/ CEO & Co-Founder at InterRayBio, LLC Johns Hopkins University Bloomberg School of Public Health Department of Biochemistry & Molecular Biology On May 28, 2020, at 2:17 PM, Bernhard Rupp <hofkristall...@gmail.com <mailto:hofkristall...@gmail.com> > wrote: Maybe I should explain an example: Say coot detects an unmodelled blob (maybe a ligand). Now, I would like to do a number of things without biasing towards a model. Like comparing these map regions, excluding intrusion of a solvent mask, etc. Now could coot for example just generate a mask around what it already knows are blobs? Possible useful items could be a solvent mask not including that regions, or a density map that includes only features with a certain boundary around that blob. I pilfered some kludges together from different sources, but let’s just say inelegant would be a compliment. Best, BR ------------------------ Brief question: Does something like a visual density mask editor exist? Thx, BR ------------------------------------------------------ Bernhard Rupp <http://www.hofkristallamt.org/> http://www.hofkristallamt.org/ <mailto:b...@hofkristallamt.org> b...@hofkristallamt.org +1 925 209 7429 +43 676 571 0536 ------------------------------------------------------ Many plausible ideas vanish at the presence of thought ------------------------------------------------------ _____ To unsubscribe from the CCP4BB list, click the following link: <https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 _____ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB <https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1> &A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
