archive.org suggests the database existed up to December 2018, but appears to be no more.
What to do when scientific resources associated with published papers disappear like this? It seems to be a problem that is not very well addressed. Cheers David On Fri, 20 Sep 2019, 04:26 Murpholino Peligro, <murpholi...@gmail.com> wrote: > Following my last question I was searching for a redundant PDB and found > this paper https://doi.org/10.1016/j.str.2007.07.012. I went to the > methods section and found out that the link to the database of redundant > protein structures is now gone (http://dper.burnham.org/). Anyone knows > of a similar database? Or anyone knows how to make one? > > Thanks again for your help. > > > Murph > > El jue., 19 de sep. de 2019 a la(s) 19:04, Dale Tronrud ( > de...@daletronrud.com) escribió: > >> >> My recollection is that gamma-chymotrypsin crystals will persist in >> pHs all the way from 3 to 9. I don't know if the crystals will grow >> over that range. >> >> There are a fair number of phage T4 lysozymes variants in the PDB. I >> don't think this is considered "overpopulation" but a valuable >> contribution to humanity. ;-) >> >> Dale Tronrud >> >> On 9/19/2019 4:03 PM, Murpholino Peligro wrote: >> > A quick glance at the entries of hen egg white lysozyme in the PDB show >> > that it can be crystallized at different pH values, but the space group >> > is not always the same. I still have to refine the analysis but I was >> > wondering that maybe there are a few proteins that can crystallize at a >> > wide range (maybe not that wide) of pH values and still have the same >> > space group? >> > >> > To refine the analysis a wee further: By any chance do you know any >> > proteins overpopulating the PDB (i.e. besides HEWL)? >> > >> > Lots of thanks as always. >> > >> > Murphy >> > >> > >> > ------------------------------------------------------------------------ >> > >> > To unsubscribe from the CCP4BB list, click the following link: >> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 >> > >> > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
