Following my last question I was searching for a redundant PDB and found this paper https://doi.org/10.1016/j.str.2007.07.012. I went to the methods section and found out that the link to the database of redundant protein structures is now gone (http://dper.burnham.org/). Anyone knows of a similar database? Or anyone knows how to make one?
Thanks again for your help. Murph El jue., 19 de sep. de 2019 a la(s) 19:04, Dale Tronrud ( de...@daletronrud.com) escribió: > > My recollection is that gamma-chymotrypsin crystals will persist in > pHs all the way from 3 to 9. I don't know if the crystals will grow > over that range. > > There are a fair number of phage T4 lysozymes variants in the PDB. I > don't think this is considered "overpopulation" but a valuable > contribution to humanity. ;-) > > Dale Tronrud > > On 9/19/2019 4:03 PM, Murpholino Peligro wrote: > > A quick glance at the entries of hen egg white lysozyme in the PDB show > > that it can be crystallized at different pH values, but the space group > > is not always the same. I still have to refine the analysis but I was > > wondering that maybe there are a few proteins that can crystallize at a > > wide range (maybe not that wide) of pH values and still have the same > > space group? > > > > To refine the analysis a wee further: By any chance do you know any > > proteins overpopulating the PDB (i.e. besides HEWL)? > > > > Lots of thanks as always. > > > > Murphy > > > > > > ------------------------------------------------------------------------ > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > > > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
