Well - I just edited the HETATM to ATOM and the TER went away.. Something (Refmac? Coot?? mystery?) was labelling all atoms in MSE residues as HETATM and that was a BAD THING.. Eleanor
On 7 November 2017 at 08:05, Abhishek Anan <rendezvous.a...@gmail.com> wrote: > Are you LINK records properly defined? You might want to check them. I > had a similar issue and updating links fixed it. > > Best > Abhishek > > On 11/7/17, Eleanor Dodson <eleanor.dod...@york.ac.uk> wrote: > > No - it is not. > > > > I have seen similar problems. > > Your atom records arent labelled as HETATM are they? > > > > That triggers strange behavior. > > Eleanor > > > > > > On 7 November 2017 at 07:13, Abhishek Anan <rendezvous.a...@gmail.com> > > wrote: > > > >> Are you adding the cif file of the unnatural amino acid on LIB in path > >> in refmac. > >> > >> Best, > >> Abhishek > >> > >> > >> > >> On 11/7/17, Rashi Aggarwal <agg.rash...@gmail.com> wrote: > >> > Dear all, > >> > > >> > I have an unnatural amino acid in my structure which I could > >> > successfully > >> > add in coot. The amino acid is taking the right bonds when viewed with > >> > coot. However, the pdb file has a ter line just above the residue. > >> > > >> > If I remove this line and submit the pdb to refmac it again adds the > >> > ter > >> > line, I can still remove it and go ahead with validation but is it the > >> > right thing to do? > >> > > >> > Thanks > >> > > >> > Best, > >> > Rashi > >> > > >> > > >
