Are you LINK records properly defined? You might want to check them. I had a similar issue and updating links fixed it.
Best Abhishek On 11/7/17, Eleanor Dodson <eleanor.dod...@york.ac.uk> wrote: > No - it is not. > > I have seen similar problems. > Your atom records arent labelled as HETATM are they? > > That triggers strange behavior. > Eleanor > > > On 7 November 2017 at 07:13, Abhishek Anan <rendezvous.a...@gmail.com> > wrote: > >> Are you adding the cif file of the unnatural amino acid on LIB in path >> in refmac. >> >> Best, >> Abhishek >> >> >> >> On 11/7/17, Rashi Aggarwal <agg.rash...@gmail.com> wrote: >> > Dear all, >> > >> > I have an unnatural amino acid in my structure which I could >> > successfully >> > add in coot. The amino acid is taking the right bonds when viewed with >> > coot. However, the pdb file has a ter line just above the residue. >> > >> > If I remove this line and submit the pdb to refmac it again adds the >> > ter >> > line, I can still remove it and go ahead with validation but is it the >> > right thing to do? >> > >> > Thanks >> > >> > Best, >> > Rashi >> > >> >
