Dear all, I always use the SUPERPOSE tool in CCP4 to superpose molecules. This time I want to use the RMSD values of superposed C-alpha atoms to plot a RMSD graph (instead of using the graph automatically made by the program). However, there are many atoms missing in the RMSD list.
In the settings I chose “Superpose specific atoms/residues”, checked “Output all distances to a file”, fit “C-alpha atoms”. The superposed structures have exactly the same sequence. My question is: is there any way to get the completed list of RMSD value for each C-alpha atom? Or is there any other program for this purpose? Thank you! Kind regards, Wenhe
