On Mon, Dec 8, 2014 at 7:24 PM, Keller, Jacob <kell...@janelia.hhmi.org>
wrote:

>  FYI, sometimes native nucleotides can make it through protein
> purifications if binding is tight.
>

This is especially true for G-proteins, since tight binding to GDP is an
essential part of their function.  I don't know what to expect from E. coli
proteins, but human Ras co-purifies with GDP at close to 1:1.

At low resolution, it might be easiest to superimpose the closest
nucleotide-bound homolog and see how well the density aligns with the
nucleotide.

-Nat

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