Monika,
  There are several possible causes for the problem you are
encountering, but your description is a little too vague to discern
them.
  Scenario 1) You ran phaser with the option "all possible spacegroups",
for several different components of your crystal, setup individually,
and the runs do not agree on the "best spacegroup"? -- In that case,
phaser had problems determining the correct spacegroup, I'd suggest you
search for all components, but in separate runs for each possible
spacegroup.
  Scenario 2) You assumed your spacegroup assignment was correct, and
ran MR for each of your components individually, and when you display
the solutions, they overlap. In this case, you might have your solutions
on different origins. The best way out is to use the first solution as a
"fixed solution", which is possible in most MR programs, and then search
for the next component.
  There might be other scenarios, if you describe your situation in more
detail (how many components in the crystal setup, what program you used,
how you used it, and what you mean by "different symmetries"), we might
be able to help you better,

Cheers,

Jens

On Tue, 2014-02-18 at 14:59 -0300, Monika Coronado wrote:
> Dear,
> 
> Does anyone know how to merge two molecules with different symmetry?
> 
> I will explain:
> 
> I have done the molecular replacement using the domains of the
> molecules separately, now I have to put all together, however they
> have a different symmetry.
> 
> 
> I will appreciate any kind of help.
> 
> 
> 
> Regards, 
> 
> 
> 
> 
> Mônika
> 
> -- 
>          __o
>       _`\<,_
>      (*)/ (*)
>  -+-+-+-+-+-+-
> * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
> * * * *
> ...E tudo muda...
> 
> * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
> * * * * 
> 

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