Hi Ed, WASP analyse water molecules in high-resolution protein structure to check if some of those could be metal ions. WASP could be run as a part of STAN server. STAN - the STructure ANalysis server from USF ( http://xray.bmc.uu.se/cgi-bin/gerard/rama_server.pl )
One could also identity potential metal ions within COOT as well. HTH, Best Wishes, Partha On Fri, Nov 8, 2013 at 9:09 PM, Edward A. Berry <ber...@upstate.edu> wrote: > Is there a server or program to predict binding sites for monovalent metal > ions? > Ideally should work with just the protein structure, but a program that > sorts through > the waters in a high resolution structure and tells which are likely to be > K+ or Na+ > would also be of interest. > > Ed >
