Hi Wenzong,
I would certainly try it also another way.
Choose you beta turn sequence. Insert it between the sequences of both
beta stands and submit the whole sequence (beta-turn-beta) to homology
modeling.
Try every beta turn sequence to select top results.
You could download MolIde (http://dunbrack.fccc.edu/molide/) and do the
exercise in local mode.
Best of luck,
Nadir Mrabet
Pr. Nadir T. Mrabet
Structural & Molecular Biochemistry
N-gere - INSERM U-954
University of Lorraine, Nancy
School of Sciences and Technologies
& School of Medicine
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On 23/04/2013 00:48, Wenzong Li wrote:
Dear All,
I want to use modelling software to design a tight beta turn replacing a loop
between two beta strands. Can anyone suggest a program to do this sort of
modelling?
Thank you
Wenzong
