superpose and gesamt in ccp4 On 14 Mar 2013, at 20:53, Chen Zhao wrote:
> Dear all, > > I am now struggling to align two 3D RNA structures. I know there are a bunch > of web servers, but they either just generated a pdb file with a single > "aligned" structure, or they left the ligand out. > > Does any of you have some recommendations? > > Alternatively, is there some software that can calculate the transformation > matrix between the coordinates in 2 pdb files? Then I could add the ligand > back by myself. I suspect that Matlab is able to do this, but I would save it > as the last resort. > > Thank you so much! > > Best, > Chen -- Scanned by iCritical.
