On Wed, Feb 27, 2013 at 12:27:46PM -0500, Ed Pozharski wrote:
> I am trying to compile refmac from source on a machine running Ubuntu
> 12.04.  In a nutshell, after some troubleshooting I end up with
> executable that generates a segmentation fault.  Log-file states that
> 
> >>>>>> CCP4 library signal ccp4_parser:Failed to open external command
> file (Success)
>          raised in ccp4_parser <<<<<<
> 
> (hardly a success).  Potentially relevant details are that I had to
> compile libccp4 and libmmdb to get to this point.

as shared libraries?

> So perhaps it's some incompatibility between libccp4/libmmdb that I
> compiled and those that came with CCP4 installation (by the way, the new

to see which libraries are used do:
ldd /path/to/newly/compiled/refmac5

and to use new refmac with new libraries do:
LD_LIBRARY_PATH=/path/to/newly/compiled/libs /path/to/new/refmac

Best
Marcin
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