Dear Sheng,
On the website of the NDB (Nucleic Acid Database), there's plenty of
links to software tools like 3DNA, Freehelix,.., which will do the
trick.
(I would recommend 3DNA)
http://ndbserver.rutgers.edu/services/index.html
Regards
Kristof
On 28 Aug 2012, at 09:57, cuisheng2007 wrote:
Dear all:
Is there software or web-server that can measure DNA geometry (PDB
coordinates) precisely, such as groove width, helix diameter, helix
axis, base tilt angle, helix rise per base pair…
It is surely doable to measure and estimate them manually, but I am
just wondering if there are better ways or automatic ways.
Many thanks
sheng
