Mine reads: /usr/local/ccp4/6.2.0/ccp4-6.2.0/share/python:/usr/local/ccpnmr/ccpnmr1.0/python
That should work, right? Where else can I look, for the failing import? This is a lettuce-fresh install, pulled straight off web and installed with all defaults.
Cheers phx. On 18/10/2011 08:38, Tim Gruene wrote:
-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hi Frank, it may not be the python binary itself but the PYTHONPATH which is incorrectly set. After initialising ccp4, mine reads tg@slartibartfast:~$ echo $PYTHONPATH /xtal/Suites/CCP4/ccp4-6.2.0/share/python: which is modified around line 231 in $CBIN/include/ccp4.setup My python binary is /usr/bin/python, and I have used buccaneer without errors. Tim On 10/17/2011 09:30 PM, Frank von Delft wrote:- -- - --Hi, we got around to switching to ccp4 version 6.2.0, but now buccaneer fails from the GUI. Below is what shows up if you view the com file before execution; and below that the logfile. Seems to me it's using the wrong python executable; the first one on my path is certainly nothing to do with ccp4, so now wonder it can't import. Shouldn't python be invoked explicitly with its full path? Where can I set this? (Mind you, setting it in the Run&View didn't work.) Cheers phx *Run&View Com File: * python -u /usr/local/ccp4/6.2.0/ccp4-6.2.0/bin/buccaneer_pipeline -stdin *Logfile* #CCP4I VERSION CCP4Interface 2.1.0 #CCP4I SCRIPT LOG buccaneer_pipeline #CCP4I DATE 17 Oct 2011 18:45:20 #CCP4I USER loretta #CCP4I PROJECT PROJECT #CCP4I JOB_ID 13 #CCP4I SCRATCH /tmp/loretta #CCP4I HOSTNAME hestia.sgc.ox.ac.uk #CCP4I PID 13684 *************************************************************************** * Information from CCP4Interface script *************************************************************************** The program run with command: python -u /usr/local/ccp4/6.2.0/ccp4-6.2.0/bin/buccaneer_pipeline -stdin has failed with error message Traceback (most recent call last): File "/usr/local/ccp4/6.2.0/ccp4-6.2.0/bin/buccaneer_pipeline", line 3, in<module> from CCP4pipeline import Control ImportError: No module named CCP4pipeline ***************************************************************************Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.10 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFOnSz+UxlJ7aRr7hoRAvmXAJ4uDTlGMIRPGR99h7fR4oeBIytb/wCfcfMP 09DpVoL70bWQMpG9wEKMEmc= =atc8 -----END PGP SIGNATURE-----
