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Hi Frank,
it may not be the python binary itself but the PYTHONPATH which is
incorrectly set. After initialising ccp4, mine reads
tg@slartibartfast:~$ echo $PYTHONPATH
/xtal/Suites/CCP4/ccp4-6.2.0/share/python:
which is modified around line 231 in $CBIN/include/ccp4.setup
My python binary is /usr/bin/python, and I have used buccaneer without
errors.
Tim
On 10/17/2011 09:30 PM, Frank von Delft wrote:
> Hi, we got around to switching to ccp4 version 6.2.0, but now buccaneer
> fails from the GUI. Below is what shows up if you view the com file
> before execution; and below that the logfile.
>
> Seems to me it's using the wrong python executable; the first one on my
> path is certainly nothing to do with ccp4, so now wonder it can't import.
>
> Shouldn't python be invoked explicitly with its full path? Where can I
> set this? (Mind you, setting it in the Run&View didn't work.)
> Cheers
> phx
>
>
>
>
> *Run&View Com File: *
> python -u /usr/local/ccp4/6.2.0/ccp4-6.2.0/bin/buccaneer_pipeline -stdin
>
>
> *Logfile*
> #CCP4I VERSION CCP4Interface 2.1.0
> #CCP4I SCRIPT LOG buccaneer_pipeline
> #CCP4I DATE 17 Oct 2011 18:45:20
> #CCP4I USER loretta
> #CCP4I PROJECT PROJECT
> #CCP4I JOB_ID 13
> #CCP4I SCRATCH /tmp/loretta
> #CCP4I HOSTNAME hestia.sgc.ox.ac.uk
> #CCP4I PID 13684
>
> ***************************************************************************
> * Information from CCP4Interface script
> ***************************************************************************
> The program run with command: python -u
> /usr/local/ccp4/6.2.0/ccp4-6.2.0/bin/buccaneer_pipeline -stdin
> has failed with error message
> Traceback (most recent call last):
> File "/usr/local/ccp4/6.2.0/ccp4-6.2.0/bin/buccaneer_pipeline", line
> 3, in <module>
> from CCP4pipeline import Control
> ImportError: No module named CCP4pipeline
> ***************************************************************************
>
>
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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