On 18 Aug 2011, at 09:29, Eric Karg wrote: > Thanks Huw. Unfortunately I have the same problem when using the new > libraries. Maybe it has something to do with the pdb file (output from > Phaser) I'm trying to refine. Do I have to rename the residues in the pdb > file or is there another trick?
This was indeed a problem with the pdb file from Phaser which contained U and G but *s not 's and O1P not OP1 etc. I guess this means that to minimise conversion woes it's important to make sure any nucleic search model input to Phaser is v3.2 syntax and then everything downstream will work. Hopefully someday this mess will be a distant memory! Huw -- Dr Huw Jenkins Astbury Centre for Structural Molecular Biology University of Leeds
