Hi Eric,
Once you merge the ligand coordinates to your model and do one round of
refinement, the next time you open up coot and try using the real space
refinement it never works (even if you import cif dictionary of your ligand)
so not sure if its a problem with coot. Did anyone else had similar
problems?
thanks,
Shya

On Wed, Aug 17, 2011 at 12:10 PM, Eric Karg <harvard...@yahoo.com> wrote:

> Thanks for the suggestions. I could solve the problem by using the setenv
> command to the coot directory,but I still cannot use the Real Space Refine
> Zone in Coot because the names are not compatible. I'm trying to build an
> RNA molecule by the way.
>
> Any suggestions?
>
> Eric
>

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