There is another potential problem in the ccp4.setup-sh file: the lines if test "LD_LIBRARY_PATH"; then
and if test "DYLD_LIBRARY_PATH"; then (which always evaluate to true) should be if test "$LD_LIBRARY_PATH"; then and if test "$DYLD_LIBRARY_PATH"; then Otherwise you end up with LD_LIBRARY_PATH settings that could contain a dangling "...:" - not sure if that could mess up your environment? Cheers Clemens -- *************************************************************** * Clemens Vonrhein, Ph.D. vonrhein AT GlobalPhasing DOT com * * Global Phasing Ltd. * Sheraton House, Castle Park * Cambridge CB3 0AX, UK *-------------------------------------------------------------- * BUSTER Development Group (http://www.globalphasing.com) ***************************************************************