I believe FFAS03 will renumber aa's based on the sequence you plug into it, and then give you two choices - complete replacement of all residues, or just the exact matches and stub to serine for the others.
cheers, On Thu, Feb 3, 2011 at 8:11 AM, Justin Hall <hallj...@onid.orst.edu> wrote: > Dear Community, > > I am looking for a tool that can convert a potential MR search model to > match the residue number and a.a. type of my actual protein. Specifically, I > have a homolog structure, with slightly different start and stop residues, > and several non identical a.a.s relative to my protein. Can anyone direct me > to a tool that can renumber the a.a.s in my search model, and stub > nonidentical a.a.s to Ala? I recall there is a program in CCP4 that will > renumber, leaving the user to change a.a. type, but this problem seams like > such a common one that I am surprised there is not a utility that would > perform both functions. Cheers~ > > ~Justin > -- Amy K. Wernimont, PhD Structural Genomics Consortium University of Toronto MaRS South Tower, Suite 705 101 College Street Toronto, Ontario Canada M5G 1L7 Tel: 416.978.1859
