Justin, Try the PHYRE server. We recently solved a difficult structure using a model produced by PHYRE.
Cheers, Roger Rowlett On Feb 3, 2011 8:12 AM, "Justin Hall" <hallj...@onid.orst.edu> wrote: > Dear Community, > > I am looking for a tool that can convert a potential MR search model > to match the residue number and a.a. type of my actual protein. > Specifically, I have a homolog structure, with slightly different > start and stop residues, and several non identical a.a.s relative to > my protein. Can anyone direct me to a tool that can renumber the a.a.s > in my search model, and stub nonidentical a.a.s to Ala? I recall there > is a program in CCP4 that will renumber, leaving the user to change > a.a. type, but this problem seams like such a common one that I am > surprised there is not a utility that would perform both functions. > Cheers~ > > ~Justin
