I am not sure that I understand your question perfectly... You can add/remove 
waters "automatically" during refinement using the proper options. After 
refinement, then
you can also (i.e. you should also) take the output mtz file and use a graphics 
program (with PDB and MTW file) for modelling (including addition/deletion of 
waters).
Several programsavailable, the one I use nowadays is Coot. But perhaps this is 
not the question you are asking...

Fred.

> Message du 16/10/10 16:29
> De : "Hussain Bhukyagps" 
> A : CCP4BB@JISCMAIL.AC.UK
> Copie à : 
> Objet : [ccp4bb] How to add water molecules..??
> 
> Dear All,
> 
> How to add water molecules in the structure (PDB) after all the 
> refinements..??
> 
> Thank You, 
> Hussey.
> 
> 
> 

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