XtalPred http://ffas.burnham.org/XtalPred-cgi/xtal.pl
or if you have data already let Balbes do the job. Jürgen On May 23, 2010, at 3:34 PM, Miri Hirshberg wrote: > Sun., May 23rd 2010 > EBI > > Paul, > > 1. yes you can run your sequence against all PDB. > > 1. http://www.ebi.ac.uk/pdbe-srv/view/ > drop the one letter sequence in the sequence box > and search > > 2. http://www.ebi.ac.uk/Tools/fasta33/index.html > > From the Databases protein you pick > Protein structure Sequence > > You drop your 1-letter code sequence in the sequence box and search > You > > both 1&2 run the same search but the layout of the output is a > bit different. > > 3. You can also try http://meta.bioinfo.pl/submit_wizard.pl > it will predict 3D structure using many methods. > > Miri > > On Sun, 23 May 2010, Paul Lindblom wrote: > >> >> Hi everybody, >> >> I just crystallized a new project protein. How can I find a possible model >> for using molecular replacement? I have >> the sequence of my protein. Is it enough to make a sequence search in the >> pdb? Or is there another approach I can >> use? >> >> Thanks a lot, >> >> Paul >> >> >> > > > ------------------------------------ > Dr Miri Hirshberg > European Bioinformatics Institute UK > PDBe - EBI -EMBL > http://www.ebi.ac.uk/pdbe > > Phone: +44 (0) 1223 492647 > FAX: +44 (0) 1223 494468 > ------------------------------------ - Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry & Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-3655 http://web.mac.com/bosch_lab/
