Sun., May 23rd 2010
EBI
Paul,
1. yes you can run your sequence against all PDB.
1. http://www.ebi.ac.uk/pdbe-srv/view/
drop the one letter sequence in the sequence box
and search
2. http://www.ebi.ac.uk/Tools/fasta33/index.html
From the Databases protein you pick
Protein structure Sequence
You drop your 1-letter code sequence in the sequence box and search
You
both 1&2 run the same search but the layout of the output is a
bit different.
3. You can also try http://meta.bioinfo.pl/submit_wizard.pl
it will predict 3D structure using many methods.
Miri
On Sun, 23 May 2010, Paul Lindblom wrote:
Hi everybody,
I just crystallized a new project protein. How can I find a possible model for
using molecular replacement? I have
the sequence of my protein. Is it enough to make a sequence search in the pdb?
Or is there another approach I can
use?
Thanks a lot,
Paul
------------------------------------
Dr Miri Hirshberg
European Bioinformatics Institute UK
PDBe - EBI -EMBL
http://www.ebi.ac.uk/pdbe
Phone: +44 (0) 1223 492647
FAX: +44 (0) 1223 494468
------------------------------------
