Hussain, Spheres, dots, non-bonded spheres are for atoms. Sticks and lines show bonds. This indicates that your metal isn't bound to anything. If you like, feel free to send me the file or a snippet of it and I'll take a look. PyMOL does have some weirdness when it comes to figuring out proper bonding, especially in things like heme groups: you might have to do some bond-editing yourself.
Good luck, -- Jason On Mon, Apr 12, 2010 at 3:14 PM, Hussain Bhukyagps <[email protected]> wrote: > Dear Jason Vertrees, > > My ligand is a metal complex. > > i followed the way u suggested to me, but still i'm not able to solve it. > > it is working for spheres, dots, nb_spheres etc.. But not sticks and lines. > > By the way i'm able to generate > > thank U... > > Send free SMS to your Friends on Mobile from your Yahoo! Messenger. > Download Now! http://messenger.yahoo.com/download.php > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) [email protected] (o) +1 (603) 374-7120
