--- On Mon, 12/4/10, Jason Vertrees <jason.vertr...@schrodinger.com> wrote:
From: Jason Vertrees <jason.vertr...@schrodinger.com> Subject: Re: [ccp4bb] How to show the ligand in my protein as sticks....??? To: "Hussain Bhukyagps" <hsn...@yahoo.com> Cc: CCP4BB@jiscmail.ac.uk Date: Monday, 12 April, 2010, 6:33 PM Hussain, You can do a couple things. (1) At the PyMOL command line type: as sticks, organic (2) Create an organic selection using the mouse via the object menu, A > Generate > Selection > Organic. PyMOL makes a new selection for you (if there is at least one organic small molecule). Then, from the new selection select S > As > Sticks. By the way, "A > Generate > Selection" means select "A" for your protein of choice, then from that menu select "Generate" then "Selection", ... and so on. Hope this helps, -- Jason On Mon, Apr 12, 2010 at 2:15 PM, Hussain Bhukyagps <hsn...@yahoo.com> wrote: Dear all i'm trying to show ligand which is in the pdb of my protein as sticks, but it is showing the folowing message in the pymol Tcl/Tk GUI. You clicked /1204//X/TL1`0/C10 Selector: selection "sele" defined with 45 atoms. but it not responding to that command. can any one help..?? thank you. Send free SMS to your Friends on Mobile from your Yahoo! Messenger. Download Now! http://messenger.yahoo.com/download.php -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 Dear Jason Vertrees, my ligand is a metal complex. I followed the way you suggested me, but still i'm not able solve it. by the way i generated new selection but it is not working for lines and sticks. it is working with spheres and dots and also nb_spheres etc.. thank you Send free SMS to your Friends on Mobile from your Yahoo! Messenger. Download Now! http://messenger.yahoo.com/download.php
