Perhaps supcomb could do this:
http://www.embl-hamburg.de/ExternalInfo/Research/Sax/supcomb.html
Quoting Gerard DVD Kleywegt <ger...@xray.bmc.uu.se>:
But it still won't solve Miri's problem. I think what she is asking
for is a program that detects which atoms should be matched to
which, irrespective of their names (i.e., not assuming they are
called " CA ") and order (i.e., not nicely sequential such as
amino-acid residues), and then applies the operator that follows
from that.
--dvd
On Fri, 26 Feb 2010, Kevin Cowtan wrote:
SSM is also available in Coot and CCP4MG of course...
Eleanor Dodson wrote:
would ssm serve your purpose?
eleanor
ebi or ccp4i
Miri Hirshberg wrote:
Sun., Jan. 17th 2010
EBI
Greetings,
I am looking for a 3D structure superposition program which takes
two structures and superpose them based only on the coordinates X,Y,Z
regardless of of residue/atoms name.
(both files are in PDB format)
Thanks
Miri
------------------------------------
Dr Miri Hirshberg
European Bioinformatics Institute UK
PDBe - EBI -EMBL
http://www.ebi.ac.uk/pdbe
Phone: +44 (0) 1223 492647
FAX: +44 (0) 1223 494468
------------------------------------
Best wishes,
--Gerard
******************************************************************
Gerard J. Kleywegt
Dept. of Cell & Molecular Biology University of Uppsala
Biomedical Centre Box 596
SE-751 24 Uppsala SWEDEN
http://xray.bmc.uu.se/gerard/ mailto:ger...@xray.bmc.uu.se
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