The Matchmaker utility in Chimera is another good one: http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/matchmaker/matchmaker.html
On Sun, Jan 17, 2010 at 12:54 PM, Miri Hirshberg <m...@ebi.ac.uk> wrote: > Sun., Jan. 17th 2010 > EBI > > Greetings, > > I am looking for a 3D structure superposition program which takes > two structures and superpose them based only on the coordinates X,Y,Z > regardless of of residue/atoms name. > > (both files are in PDB format) > > Thanks > Miri