Ed Pozharski wrote:
http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
Try PISA server - it will identify contacts and report total buried
surface area per contact.
On Fri, 2010-02-19 at 16:42 +0100, Jane Bailey wrote:
Dear all,
I am trying to calculate the domain-domain contact surface from one
chain. I see AREAIMOL to only tell you the accessible surface
area/residue. Could any other software/webserve could specify residues
in the contact surface and calculate the total contact area?
Thanks
J.
Dear all,
Thanks very much for the answers. I managed to get the interface from
PISA by assign two chain IDs onto two domains, as suggested by Pierre
and Amy. It gave the interface Solvent-accessible area of each domain:
274.2, 312.2, but not the BSA. However I saw it gave the BSA of
individual residue from the interface. Do people get the total interface
BSA by adding them up?
best
Jane
