Hi Tim If I type findwaters, it finds the command without any problems. Also, Coot directory is in the same path as in the previous version - that worked fine. I can't see a clear reason for it not to work from within ccp4i or Refmac...
Any help is appreciated... Paula 2010/1/20 Tim Gruene <t...@shelx.uni-ac.gwdg.de> > Hi Paula, > > did you check if Coot/bin is in the PATH variable when you start ccp4i? > Maybe the coot executable you run is a wrapper that sets the path which is > not done as you start ccp4i. > > Try to type 'findwaters' from the same terminal you start ccp4i from. Does > that yield a 'command not found'? > > Tim > > -- > Tim Gruene > Institut fuer anorganische Chemie > Tammannstr. 4 > D-37077 Goettingen > > GPG Key ID = A46BEE1A > > > On Tue, 19 Jan 2010, Paula Salgado wrote: > > > Hi everyone > > > > I just downloaded and installed the newest ccp4i release, including Coot > > 0.6.0. It all seemed fine, except when I try to run refmac from ccp4i, > > using the "Run Coot:findwaters", process fails with error message; > > > > > ************************************************************************** > > > > The program run with command: findwaters --pdbin > > "/tmp/psalgado/test_pdb_1.tmp" --hklin "/tmp/psalgado/test_mtz_1.tmp" --f > > DELFWT --phi PHDELWT --pdbout "/tmp/psalgado/test_1.tmp" --sigma 2.0 > > > > has failed with error message > > > > couldn't execute "findwaters": no such file or directory > > > > > *************************************************************************** > > > > > > #CCP4I TERMINATION STATUS 0 "couldn't execute "findwaters": no such file > > or directory" > > > > #CCP4I TERMINATION TIME 19 Jan 2010 12:39:26 > > > > #CCP4I MESSAGE Task failed > > > > > > > > I checked and the Coot/bin directory exists and it contains a > > "findwaters" executable file. > > > > I should add that doing "find waters" within Coot works fine. > > > > > > Any ideas? All help welcomed. > > > > > > Thanks! > > > > Paula > > > > ========================================================= > > > > Dr Paula Salgado > > > > Division of Molecular Biosciences > > Department of Life Sciences > > Faculty of Natural Sciences > > Biochemistry Building, 5th Floor > > Imperial College London > > South Kensington Campus > > SW7 2AZ > > London > > > > Tel: 02075945464 > > Fax: +44 (0)20 7594 3057 > > > > >
