Thank you very much for the advice Dr. Weeks, I could run CCP4 GUI now with out any problem.
As you have rightly said, I downloaded the COOT along with CCP4 as a package (generic linux x86 version). I will try downloading the CENT OS version and follow the method from the previous posts to run COOT. sincerely sankar On Tue, 04 Aug 2009 Stephen Weeks wrote : > Sankar, > All the executables you downloaded (including > bltwish) from the CCP4 > site are compiled on a 32bit machine. You just need to > install the 32bit > shared library package via synaptic. The following > terminal command should > do. > > sudo apt-get ia32-libs > > > As for coot for what platform is your version compiled > for ? We've had > pretty good success with the Centos 64 bit version > running on Ubuntu 9.04 > (although you can't retrieve PDB files or maps from the > EDS server from > within the program). You can also always build you own, > this was brought up > on a another post on the BB. The coot version that > comes with CCP4, if you > took that option, will not run on 64 bit ubuntu. > > Stephen > > > 2009/8/3 Sankar narayanan <san...@mkustrbioinfo.com> > > > hi > > > > I installed CCP4 with Coot downloaded as a binary > from the CCP4 website on > > a 64bit Ubuntu 9.04. > > > > The installation was flawless and the setup scripts > ran like a charm. > > > > however, when i type ccp4i to get the GUI. > > > > i get the following error message: > > > > exec: 4: /usr/local/xtal/tcltk++/bin/bltwish: not > found > > > > bltwish is there in the specified directory, which i > manually checked. > > > > for coot, > > > > i get the following error messages:. > > > > COOT_PREFIX is /usr/local/xtal/Coot-0.5.2 > > /usr/local/xtal/Coot-0.5.2/bin/coot-real > > /usr/local/xtal/Coot-0.5.2/bin/coot: 123: > > /usr/local/xtal/Coot-0.5.2/bin/coot-real: not found > > /usr/local/xtal/Coot-0.5.2/bin/coot: 130: > > /usr/local/xtal/Coot-0.5.2/bin/guile: not found > > > > All these files are there in the specified > directories, which i checked > > manually. > > > > But still i could not run. > > Am i doing some thing terribly wrong ? > > > > sincerely > > sankar > > > > > > > > On Sat, 04 Jul 2009 Thomas J Magliery PhD wrote : > > > Hi, I just installed the 64-bit version of Ubuntu > 9.04 > > > Desktop, and then > > > I installed CCP4 6.1.1 using the standard package > and > > > installation > > > script. I can run ccp4i successfully. However, > when I > > > try to run Coot, > > > I get a bunch of errors. I think the problem is > that > > > Coot was compiled > > > with 32-bit libraries, which I don't have. > > > > > > Is there some way to fix this without compiling > Coot or > > > re-installing > > > with 32-bit Ubuntu? Who knows how, but I have CCP4 > > > (6.0.2) and Coot > > > (0.5-pre-1) working on my 64-bit FC8 laptop. > > > > > > Thanks, > > > Tom > > > > > > === > > > COOT_PREFIX is /usr/local/CCP4/Coot-0.5.2 > > > /usr/local/CCP4/Coot-0.5.2/bin/coot-real > > > Acquiring application resources from > > > /usr/local/CCP4/Coot-0.5.2/share/coot/cootrc > > > Gtk-Message: Failed to load module > > > "canberra-gtk-module": > > > /usr/lib/gtk-2.0/modules/libcanberra-gtk-module.so: > > > wrong ELF class: > > > ELFCLASS64 > > > INFO:: splash_screen_pixmap_dir > > > /usr/local/CCP4/Coot-0.5.2/share/coot/pixmaps > > > INFO:: Colours file: /usr/local/CCP4/Coot-0.5.2/shar- > e/co- > > > ot/colours.def > > > loaded > > > INFO:: Using Standard CCP4 Refmac dictionary from > > > CLIBD_MON: > > > /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers/ > > > There are 118 data in > > > /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//list/m- > on_l- > > > ib_list.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//a/ALA.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//a/ASP.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//a/ASN.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//c/CYS.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//g/GLN.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//g/GLY.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//g/GLU.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//p/PHE.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//h/HIS.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//i/ILE.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//l/LYS.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//l/LEU.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//m/MET.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//m/MSE.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//p/PRO.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//a/ARG.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//s/SER.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//t/THR.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//v/VAL.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//t/TRP.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//t/TYR.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//p/PO4.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//s/SO4.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//g/GOL.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//e/ETH.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//c/CIT.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//a/AR.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//a/AD.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//c/CR.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//c/CD.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//g/GR.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//g/GD.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//t/TD.cif > > > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/d- > ata/- > > > monomers//u/UR.cif > > > Reading coordinate file: > > > /usr/local/CCP4/Coot-0.5.2/share/coot/standard-resid- > ues.- > > > pdb > > > PDB file /usr/local/CCP4/Coot-0.5.2/share/coot/stand- > ard-- > > > residues.pdb has > > > been read. > > > Spacegroup: P 1 > > > Cell: 40.631 109.18 93.243 90 90 90 > > > /usr/lib/gio/modules/libgioremote-volume-monitor.so: > > > wrong ELF class: > > > ELFCLASS64 > > > Failed to load module: /usr/lib/gio/modules/libgiore- > mote- > > > -volume-monitor.so > > > /usr/lib/gio/modules/libgvfsdbus.so: wrong ELF > class: > > > ELFCLASS64 > > > Failed to load module: /usr/lib/gio/modules/libgvfsd- > bus.- > > > so > > > /usr/lib/gio/modules/libgiogconf.so: wrong ELF > class: > > > ELFCLASS64 > > > Failed to load module: /usr/lib/gio/modules/libgiogc- > onf.- > > > so > > > initalize graphics molecules...done. > > > (filter-fileselection-filenames-state) > > > (get-active-map-drag-flag) > > > (use-graphics-interface-state) > > > ERROR: In procedure dynamic-link: > > > ERROR: file: "libguile-srfi-srfi-1-v-3", message: > > > "/usr/lib/libguile-srfi-srfi-1-v-3.so.3: wrong ELF > > > class: ELFCLASS64" > > > Gtk-Message: Failed to load module > > > "canberra-gtk-module": > > > /usr/lib/gtk-2.0/modules/libcanberra-gtk-module.so: > > > wrong ELF class: > > > ELFCLASS64 > > > coot-exe: "/usr/local/CCP4/Coot-0.5.2/bin/coot-real" > > > coot-version: > > > /usr/local/CCP4/Coot-0.5.2/bin/coot-real > > > core: #f > > > No core file found. No debugging > > > === > > > > > > P.S. Hi Paul. > > > > > > -- > > > Thomas J. Magliery, Ph.D. > > > Assistant Professor > > > Department of Chemistry > > > & Department of Biochemistry > > > The Ohio State University > > > 1043 Evans Laboratory > > > 100 West 18th Ave. > > > Columbus, OH 43210-1185 > > > > > > (614) 247-8425 office > > > (614) 292-1685 fax > > > magli...@chemistry.ohio-state.edu > > > http://www.chemistry.ohio-state.edu/~magliery<http:/- > /www.chemistry.ohio-state.edu/%7Emagliery> > > > > > > Sankar narayanan M.R, > > C/o Prof. S. Krishnaswamy, > > Dept. of Genetic Engineering, > > School of Biotechnology, > > Madurai Kamaraj University, > > Madurai 625021. TN, > > INDIA > > Phone : +91 452 245 9931, +91 452 245 9141, > > Mobile : +91 94860 88613 > > e-mail:san...@mkustrbioinfo.com > <e-mail%3asan...@mkustrbioinfo.com> > > Sankar narayanan M.R, C/o Prof. S. Krishnaswamy, Dept. of Genetic Engineering, School of Biotechnology, Madurai Kamaraj University, Madurai 625021. TN, INDIA Phone : +91 452 245 9931, +91 452 245 9141, Mobile : +91 94860 88613 e-mail:san...@mkustrbioinfo.com
