Sankar,
All the executables you downloaded (including bltwish) from the CCP4
site are compiled on a 32bit machine. You just need to install the 32bit
shared library package via synaptic. The following terminal command should
do.
sudo apt-get ia32-libs
As for coot for what platform is your version compiled for ? We've had
pretty good success with the Centos 64 bit version running on Ubuntu 9.04
(although you can't retrieve PDB files or maps from the EDS server from
within the program). You can also always build you own, this was brought up
on a another post on the BB. The coot version that comes with CCP4, if you
took that option, will not run on 64 bit ubuntu.
Stephen
2009/8/3 Sankar narayanan <san...@mkustrbioinfo.com>
> hi
>
> I installed CCP4 with Coot downloaded as a binary from the CCP4 website on
> a 64bit Ubuntu 9.04.
>
> The installation was flawless and the setup scripts ran like a charm.
>
> however, when i type ccp4i to get the GUI.
>
> i get the following error message:
>
> exec: 4: /usr/local/xtal/tcltk++/bin/bltwish: not found
>
> bltwish is there in the specified directory, which i manually checked.
>
> for coot,
>
> i get the following error messages:.
>
> COOT_PREFIX is /usr/local/xtal/Coot-0.5.2
> /usr/local/xtal/Coot-0.5.2/bin/coot-real
> /usr/local/xtal/Coot-0.5.2/bin/coot: 123:
> /usr/local/xtal/Coot-0.5.2/bin/coot-real: not found
> /usr/local/xtal/Coot-0.5.2/bin/coot: 130:
> /usr/local/xtal/Coot-0.5.2/bin/guile: not found
>
> All these files are there in the specified directories, which i checked
> manually.
>
> But still i could not run.
> Am i doing some thing terribly wrong ?
>
> sincerely
> sankar
>
>
>
> On Sat, 04 Jul 2009 Thomas J Magliery PhD wrote :
> > Hi, I just installed the 64-bit version of Ubuntu 9.04
> > Desktop, and then
> > I installed CCP4 6.1.1 using the standard package and
> > installation
> > script. I can run ccp4i successfully. However, when I
> > try to run Coot,
> > I get a bunch of errors. I think the problem is that
> > Coot was compiled
> > with 32-bit libraries, which I don't have.
> >
> > Is there some way to fix this without compiling Coot or
> > re-installing
> > with 32-bit Ubuntu? Who knows how, but I have CCP4
> > (6.0.2) and Coot
> > (0.5-pre-1) working on my 64-bit FC8 laptop.
> >
> > Thanks,
> > Tom
> >
> > ===
> > COOT_PREFIX is /usr/local/CCP4/Coot-0.5.2
> > /usr/local/CCP4/Coot-0.5.2/bin/coot-real
> > Acquiring application resources from
> > /usr/local/CCP4/Coot-0.5.2/share/coot/cootrc
> > Gtk-Message: Failed to load module
> > "canberra-gtk-module":
> > /usr/lib/gtk-2.0/modules/libcanberra-gtk-module.so:
> > wrong ELF class:
> > ELFCLASS64
> > INFO:: splash_screen_pixmap_dir
> > /usr/local/CCP4/Coot-0.5.2/share/coot/pixmaps
> > INFO:: Colours file: /usr/local/CCP4/Coot-0.5.2/share/co-
> > ot/colours.def
> > loaded
> > INFO:: Using Standard CCP4 Refmac dictionary from
> > CLIBD_MON:
> > /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers/
> > There are 118 data in
> > /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//list/mon_l-
> > ib_list.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//a/ALA.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//a/ASP.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//a/ASN.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//c/CYS.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//g/GLN.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//g/GLY.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//g/GLU.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//p/PHE.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//h/HIS.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//i/ILE.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//l/LYS.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//l/LEU.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//m/MET.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//m/MSE.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//p/PRO.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//a/ARG.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//s/SER.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//t/THR.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//v/VAL.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//t/TRP.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//t/TYR.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//p/PO4.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//s/SO4.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//g/GOL.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//e/ETH.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//c/CIT.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//a/AR.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//a/AD.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//c/CR.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//c/CD.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//g/GR.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//g/GD.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//t/TD.cif
> > There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/-
> > monomers//u/UR.cif
> > Reading coordinate file:
> > /usr/local/CCP4/Coot-0.5.2/share/coot/standard-residues.-
> > pdb
> > PDB file /usr/local/CCP4/Coot-0.5.2/share/coot/standard--
> > residues.pdb has
> > been read.
> > Spacegroup: P 1
> > Cell: 40.631 109.18 93.243 90 90 90
> > /usr/lib/gio/modules/libgioremote-volume-monitor.so:
> > wrong ELF class:
> > ELFCLASS64
> > Failed to load module: /usr/lib/gio/modules/libgioremote-
> > -volume-monitor.so
> > /usr/lib/gio/modules/libgvfsdbus.so: wrong ELF class:
> > ELFCLASS64
> > Failed to load module: /usr/lib/gio/modules/libgvfsdbus.-
> > so
> > /usr/lib/gio/modules/libgiogconf.so: wrong ELF class:
> > ELFCLASS64
> > Failed to load module: /usr/lib/gio/modules/libgiogconf.-
> > so
> > initalize graphics molecules...done.
> > (filter-fileselection-filenames-state)
> > (get-active-map-drag-flag)
> > (use-graphics-interface-state)
> > ERROR: In procedure dynamic-link:
> > ERROR: file: "libguile-srfi-srfi-1-v-3", message:
> > "/usr/lib/libguile-srfi-srfi-1-v-3.so.3: wrong ELF
> > class: ELFCLASS64"
> > Gtk-Message: Failed to load module
> > "canberra-gtk-module":
> > /usr/lib/gtk-2.0/modules/libcanberra-gtk-module.so:
> > wrong ELF class:
> > ELFCLASS64
> > coot-exe: "/usr/local/CCP4/Coot-0.5.2/bin/coot-real"
> > coot-version:
> > /usr/local/CCP4/Coot-0.5.2/bin/coot-real
> > core: #f
> > No core file found. No debugging
> > ===
> >
> > P.S. Hi Paul.
> >
> > --
> > Thomas J. Magliery, Ph.D.
> > Assistant Professor
> > Department of Chemistry
> > & Department of Biochemistry
> > The Ohio State University
> > 1043 Evans Laboratory
> > 100 West 18th Ave.
> > Columbus, OH 43210-1185
> >
> > (614) 247-8425 office
> > (614) 292-1685 fax
> > magli...@chemistry.ohio-state.edu
> > http://www.chemistry.ohio-state.edu/~magliery<http://www.chemistry.ohio-state.edu/%7Emagliery>
>
>
> Sankar narayanan M.R,
> C/o Prof. S. Krishnaswamy,
> Dept. of Genetic Engineering,
> School of Biotechnology,
> Madurai Kamaraj University,
> Madurai 625021. TN,
> INDIA
> Phone : +91 452 245 9931, +91 452 245 9141,
> Mobile : +91 94860 88613
> e-mail:san...@mkustrbioinfo.com <e-mail%3asan...@mkustrbioinfo.com>
>
