Craig Smith wrote:
Hello,

I have a bit of unmodeled density which look like a glycerol. I generated a glycerol using the SMILES command in COOT. How do I incorporate this in refinement in REFMAC? I'm sure I need to generate some sort of typology or library file.



No need to use SMILES, GOL is already in the dictionary - just use that (and doing so will help at deposition time too). (You could have used "Search Monomer Library" to find it).

(BTW, Coot uses LIBCHECK/REFMAC to generate the mmCIF geometry dictionary - so they should be compatible - typos notwithstanding of course).

Paul.

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