If you have perl installed, just use this script to convert as many
files as you want once by typing : perl mutala.pl myfile.pdb myfile2.pdb etc
Bottomley, Matthew wrote:
Dear All,
Can anyone recommend a windows/PC-friendly program (website?) to
convert a PDB file into a poly-Ala model?
Thanks a lot!
Matt
====================================
Matthew J. Bottomley, Ph.D.
Senior Research Biochemist
IRBM / MRL-Rome
====================================
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#!/usr/bin/perl -w
############################################################################################
# Mutala: script mutate each residue in alanine in a pdb
file #
# Written by Nicolas
Soler
#
########################FONCTIONS###########################################################
foreach $fichier (@ARGV) {
open (ENTREE,$fichier);
if (glob "polyala$fichier"){unlink "polyala$fichier"};
open SORTIE, ">>polyala$fichier";
select SORTIE;
while (<ENTREE>){if (/^ATOM.{9}(N |C |O
|CA|CB)..(\w{3})/){s/$2/ALA/;print $_}};
print "END";
close ENTREE;
close SORTIE;}
