Hi Sabine,
in addition to what Christian has written, please, also check whether
the ribose atom names contain a "*" instead of "'" to conform with
the PDB convention.
Best regards,
Dirk.
Am 22.10.2007 um 21:37 schrieb Christian Biertumpfel:
Hi Sabine,
Your problem might be an issue of the PDB format. I had troubles
using a
DNA model in coot which was refined in cns (3 letter code). When I
converted it to the single letter notation everything was fine in
coot/refmac.
Tschüß,
christian
Sabine Schneider wrote:
Hi everyone,
I am working on Protein-DNA complex and am struggling to generate a
dictionary with the right bonds/restraints for a the ds DNA of 15nt
length with 1nt overhang and a lesion. How do I link the nucleotides
together and set the right restraints in the bit with the lesion?
Tried
to read in a bit of DNA into library scatcher to get an idea what
I have
to do, but failed. Also couldn't find any example cif-files.
Thanks for your help in advance!
Sabine
______________________________________________________________________
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Dr. Christian Biertümpfel
Laboratory of Molecular Biology
NIDDK/National Institutes of Health phone: +1 301 402
4647
9000 Rockville Pike, Bldg. 5, Rm. B1-03 fax: +1 301 496
0201
Bethesda, MD 20892-0580
USA
______________________________________________________________________
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Dirk Kostrewa
Gene Center, A 5.07
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Germany
Phone: +49-89-2180-76845
Fax: +49-89-2180-76999
E-mail: [EMAIL PROTECTED]
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