http://delsci.com/morph
It's a start... -----Original Message----- From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of Gerard DVD Kleywegt Sent: Wednesday, October 03, 2007 6:55 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Morphing with mutations > What about to do a cartesian morphing with the mutated residue > added (or removed) atoms having initial ( or final) coordinates taken from > previous common atom? > Will work? Coloring may be a factor... but with a manual editing > perhaps... you mean, for instance, if you have an Ala->Trp you call the ala 'trp', add all missing 'trp' side-chain atoms and put them on top of the CB, and then morph to the real trp, so the additional side-chain atoms will slowly "explode" out of the CB and towards their final positions? (and for a Trp->Ala mutation you could do the same thing of course, but the extra side-chain atoms would then be "sucked up" by the CB like a black hole) yep, that is a trick that would probably work! if anyone gets it to work, i would be interested in seeing the result and learning details, so i could add it to the lsqman manual or the morphing tutorial --dvd ****************************************************************** Gerard J. Kleywegt [Research Fellow of the Royal Swedish Academy of Sciences] Dept. of Cell & Molecular Biology University of Uppsala Biomedical Centre Box 596 SE-751 24 Uppsala SWEDEN http://xray.bmc.uu.se/gerard/ mailto:[EMAIL PROTECTED] ****************************************************************** The opinions in this message are fictional. Any similarity to actual opinions, living or dead, is purely coincidental. ******************************************************************
