Gerard
What about to do a cartesian morphing with the mutated
residue added (or removed) atoms having initial ( or final) coordinates
taken from previous common atom?
Will work? Coloring may be a factor... but with a manual
editing perhaps...
Mario
Gerard DVD Kleywegt wrote:
Does anybody know, please, any alternative program or trick to
transfom the side chain of a residues into its mutated counterpart,
please, with a nice and smooth visual effect? Does LSQMAN, for
example, sort this problem out? It is not clear to me reading the
manual.
no, it won't. however, in certain cases you can fool it into doing
silly transmogrifications like in the animated hic-up logo
(http://xray.bmc.uu.se/hicup/hicup_anim.gif). this was generated as a
Cartesian morph from hetero compound RE9 (in PDB entry 1CBQ) to REA
(1CBS). the two hetero compounds have the same number of heavy atoms,
with the same names.
--dvd
******************************************************************
Gerard J. Kleywegt
[Research Fellow of the Royal Swedish Academy of Sciences]
Dept. of Cell & Molecular Biology University of Uppsala
Biomedical Centre Box 596
SE-751 24 Uppsala SWEDEN
http://xray.bmc.uu.se/gerard/ mailto:[EMAIL PROTECTED]
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