First question: do you need to run makereference at all? If you are
using a recent version, then reference data is supplied in
$CLIBD/reference_structures
In fact, if you are using the latest version of pirate, you don't need
to specify a reference structure at all.
So the only reason you might need a reference structure is if you are
solving something very exotic and need to use a similarly exotic
reference. In which case, can you check what type of files you have
downloaded? You should have files with names of the form:
pdb????.ent.Z
r????sf.ent.Z
Kevin
Paola Llinas wrote:
Hello,
I'm trying to use the task "make reference" in order to have a reference
structure for Pirate.
I cannot do FTP so I put the coordinate and the structure files in a local
folder. When I try to run the task with the ccp4i or manually, I have the
following message:
The program run with command: cmakereference -stdin
has failed with error message
child killed: bus error
(I'm using a Mac Intel and the 6.0.1 version of ccp4)
So, I have no idea of where is the problem. I verified the files and their
location and every thing is ok.
Could you tell me what can I do?
Thanks in advance
Paola
