Andreas Tille pushed to branch master at Debian Blends Team / med
Commits: 7f701a78 by Andreas Tille at 2020-06-04T21:04:54+02:00 Add links to software mentioned in paper at https://www.preprints.org/manuscript/202005.0376/v1 - - - - - 1 changed file: - + covid-19_doc/Computational_Strategies_to_Combat_COVID-19.txt Changes: ===================================== covid-19_doc/Computational_Strategies_to_Combat_COVID-19.txt ===================================== @@ -0,0 +1,44 @@ +https://www.preprints.org/manuscript/202005.0376/v1 + + +Computational strategies to combat COVID-19: Useful tools +to accelerate SARS-CoV-2 and Coronavirus research + + +Detection and annotation +======================== + +PriSeTi https://github.com/mariehoffmann/PriSeT +CoVPipe https://gitlab.com/RKIBioinformaticsPipelines/ +ncov_minipipe https://github.com/replikation/poreCov +VADR https://github.com/nawrockie/vadr +V-Pipe https://github.com/cbg-ethz/V-pipe +Haploflow https://nextcloud.bifo.helmholtz-hzi.de/s/j4MyspJs5kfdZxy +VIRify https://github.com/EBI-Metagenomics/emg-viral-pipeline +VBRC genome analysis tools https://www.4virology.net +VIRULIGN https://github.com/rega-cev/virulign +Rfam COVID-19 https://rfam.org/covid-19 +UniProt COVID-19 https://covid-19.uniprot.org/ +Pfam https://pfam.xfam.org + + +Tracking, epidemiology and evolution +==================================== + +Covidex https://sourceforge.net/projects/covidex +Pangolin https://github.com/hCoV-2019/pangolin/ +BEAST2 https://www.beast2.org/ +Phylogeographic reconstruction https://github.com/hzi-bifo/Phylogeography_Paper +COPASI https://github.com/copasi +COVIDSIM http://www.kaderali.org:3838/covidsim +CoV-GLUE http://cov-glue.cvr.gla.ac.uk/ +PoSeiDon https://github.com/hoelzer/poseidon + + +Drug design +=========== + +VirHostNet http://virhostnet.prabi.fr/ +CORDITE https://cordite.mathematik.uni-marburg.de +CoVex https://exbio.wzw.tum.de/covex/ +P-HIPSTer http://www.phipster.org/ View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/7f701a7887668ca02be45e41b594adda487551d8 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/7f701a7887668ca02be45e41b594adda487551d8 You're receiving this email because of your account on salsa.debian.org.
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