Hi Anamika,

Do you have some idea how they done, some tutorial ?

2009/12/5 anamika sinha <[email protected]>

> hiiii
>  ya there r mathematical formulas tht r behind the scoring,they r achieved
> through corelation and regression methods and after tht determinants and
> matrices are involved
>
>
> On Thu, Dec 3, 2009 at 8:52 PM, jyoti gupta <[email protected]> wrote:
>
>> hiii,
>>
>> satya swarup as per last mail discussion i m sending you some attached
>> files by these files you can find the details used in sequence alignment.
>>
>> feel free to ask any further query.
>>
>> thanks
>>
>> On Tue, Nov 10, 2009 at 1:52 AM, Satya Swarup Samal <
>> [email protected]> wrote:
>>
>>> Dear all,
>>>
>>> In sequence alignment algorithms e.g. Smith waterman or Needleman wunch,
>>> we have match, mismatch and gap score while comparing two sequences. But how
>>> we calculate these scores ? Is there any mathematical way or its just based
>>> on trial and error ?
>>>
>>> Thanx in advance
>>>
>>> --
>>> Best Regards
>>> Satya S. Samal
>>>
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>>
>>
>>
>>
>> --
>> Regards,
>>
>> Jyoti Rusia Gupta
>>
>>
>>
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-- 
Best,
Satya S. Samal

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