Hello Hema latha and Amala Santhanam, I am considering nucleotide sequences, So PAM and BLOSUM matrix wont help me
2009/11/12 Amala Santhanam <[email protected]> > we are using PAM and BLOSUM matrices to calculate the score > > > On 11/10/09, Satya Swarup Samal <[email protected]> wrote: >> >> Dear all, >> >> In sequence alignment algorithms e.g. Smith waterman or Needleman wunch, >> we have match, mismatch and gap score while comparing two sequences. But how >> we calculate these scores ? Is there any mathematical way or its just based >> on trial and error ? >> >> Thanx in advance >> >> -- >> Best Regards >> Satya S. Samal >> >> -- >> Dear Member, >> >> http://www.cbclickbank.com/biofriend/ >> >> Biofriend is now with great features. Like No email, catgorywise que & >> ans. >> rating and much more visit biofriend and We are sure, You will definitely >> like it. >> >> Ask your question Here ! >> http://www.cbclickbank.com/biofriend/ >> Get your Answers. >> >> Support Us to Help Others >> >> Biofriend India Team >> >> >> Please visit this link & send your friends too >> ========================================= >> >> " No email " visit >> http://www.cbclickbank.com/bioinformatics/giudence.htm > > > -- > Dear Member, > > http://www.cbclickbank.com/biofriend/ > > Biofriend is now with great features. Like No email, catgorywise que & ans. > rating and much more visit biofriend and We are sure, You will definitely > like it. > > Ask your question Here ! > http://www.cbclickbank.com/biofriend/ > Get your Answers. > > Support Us to Help Others > > Biofriend India Team > > > Please visit this link & send your friends too > ========================================= > > " No email " visit > http://www.cbclickbank.com/bioinformatics/giudence.htm > -- Best Regards Satya S. Samal ----------------------------------------------------------------------------------------- I encourage you to think about the environment before printing this e-mail. Pablo Picasso<http://www.brainyquote.com/quotes/authors/p/pablo_picasso.html> - "Computers are useless. They can only give you answers." -- Dear Member, http://www.cbclickbank.com/biofriend/ Biofriend is now with great features. Like No email, catgorywise que & ans. rating and much more visit biofriend and We are sure, You will definitely like it. Ask your question Here ! http://www.cbclickbank.com/biofriend/ Get your Answers. Support Us to Help Others Biofriend India Team Please visit this link & send your friends too ========================================= " No email " visit http://www.cbclickbank.com/bioinformatics/giudence.htm
