Dear Mustafa, The contents of code.bioconductor.org updates every 15 minutes, and should automatically reflect any changes in the central git repository.
It looks like your changes have been pushed to the devel and RELEASE_3_19 branches and can be seen here: https://code.bioconductor.org/browse/SVMDO/commits/devel https://code.bioconductor.org/browse/SVMDO/commits/RELEASE_3_19 Best, Mike On Tue, 27 Aug 2024 at 08:41, MUSTAFA ERHAN ÖZER via Bioc-devel < bioc-devel@r-project.org> wrote: > Good day, > > I tried to send the new updates of SVMDO package to and RELEASE_3_19 > branches. > > I checked that SVMDO package name appears in the package list of git . > bioconductor.org, but it is not in the table of code.bioconductor.org. > > Does that mean the updates were pushed without any problem? > Is it going to appear in code.bioconductor.org later? > > > Sincerely, > > > Kimden: "Kern, Lori" <lori.sheph...@roswellpark.org> > Kime: "Vincent Carey" <st...@channing.harvard.edu>, "MUSTAFA ERHAN ÖZER" < > erhanoze...@marun.edu.tr> > Kk: "bioc-devel" <bioc-devel@r-project.org>, "Bioc-devel" < > bioc-devel-boun...@r-project.org> > Gönderilenler: 26 Ağustos Pazartesi 2024 14:14:42 > Konu: Re: Error in SVMDO Package > > I do not see the changes pushed to git.bioconductor.org. Please check to > make sure the remotes are set up correctly and there were no ERROR's when > doing a git push. > > The release branch will NOT update automatically. You need to push the > same changes to the RELEASE_ 3 _ 19 branch of > git.bioconductor.org:packages/SVMDO > > > Cheers, > > > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of MUSTAFA > ERHAN ÖZER via Bioc-devel <bioc-devel@r-project.org> > Sent: Monday, August 26, 2024 3:12 AM > To: Vincent Carey <st...@channing.harvard.edu> > Cc: bioc-devel <bioc-devel@r-project.org>; Bioc-devel < > bioc-devel-boun...@r-project.org> > Subject: Re: [Bioc-devel] Error in SVMDO Package > Good day, > > I updated the devel branch of the SVMDO package, but I have not see it in > code.bioconductor.org yet. > I did the update approximately 2 hours ago. How long does it take to > appear? > Is it also going to automatically update release version of 3.19? > > Sincerely, > > > Kimden: "Vincent Carey" <st...@channing.harvard.edu> > Kime: "MUSTAFA ERHAN ÖZER" <erhanoze...@marun.edu.tr> > Kk: "Bioc-devel" <bioc-devel-boun...@r-project.org>, "bioc-devel" < > bioc-devel@r-project.org> > Gönderilenler: 26 Ağustos Pazartesi 2024 1:03:14 > Konu: Re: [Bioc-devel] Error in SVMDO Package > > > > On Sun, Aug 25, 2024 at 3:33 PM MUSTAFA ERHAN ÖZER via Bioc-devel < [ [ > mailto:bioc-devel@r-project.org | > mailto:bioc-devel@r-project.org ] | bioc-devel@r-project.org ] > wrote: > > > Good day, > > The recent Multiple platform build/check report for BioC 3.19 of SVMDO > package resulted in error for every platform. > > The error is " Error in `get_anno_data(ontology)`: ontology not supported > yet... " > > > The error essentially reports that "DO" is not a valid argument to > enrichDO. SVMDO should use "HDO", I believe. > > > > > Is this a package related issue that is going to be fixed by itself? > > Sincerely, > > > [[alternative HTML version deleted]] > > _______________________________________________ > [ [ mailto:Bioc-devel@r-project.org | mailto:Bioc-devel@r-project.org ] | > Bioc-devel@r-project.org ] mailing list > [ [ > https://secure-web.cisco.com/1CAOziRIN8KtCy0GPCqlXsJRzah1K2gGcYuqfN3Qclu8hVOtNzTFxNGgsW5DRUzlm2APZJz-AXCOictagXJF1PPq4kJ1WJRDtFMk2YRBJHlgKPUgBCm2V2jKpZyEf1Wgc7lKW8XQ9RomQKQiPDvw4i1ULWCO3301ZXfL0jjVFJwwEZFPY7kCtrN2WGGyr8smhfBAdqd2sTkLos6u2Ea3Hq-YUGy62NYUvnIoNG2hfLS8M0b4KKBjDnUysG3-8Bw05ADUzABpGGiU8g1cZxRRrganrsmTP8VdT-CEqSfFZ0Zmx9C9nA0Hg1JY7jKP1JXL8/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > | > > https://secure-web.cisco.com/1CAOziRIN8KtCy0GPCqlXsJRzah1K2gGcYuqfN3Qclu8hVOtNzTFxNGgsW5DRUzlm2APZJz-AXCOictagXJF1PPq4kJ1WJRDtFMk2YRBJHlgKPUgBCm2V2jKpZyEf1Wgc7lKW8XQ9RomQKQiPDvw4i1ULWCO3301ZXfL0jjVFJwwEZFPY7kCtrN2WGGyr8smhfBAdqd2sTkLos6u2Ea3Hq-YUGy62NYUvnIoNG2hfLS8M0b4KKBjDnUysG3-8Bw05ADUzABpGGiU8g1cZxRRrganrsmTP8VdT-CEqSfFZ0Zmx9C9nA0Hg1JY7jKP1JXL8/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > ] | [ > https://secure-web.cisco.com/1CAOziRIN8KtCy0GPCqlXsJRzah1K2gGcYuqfN3Qclu8hVOtNzTFxNGgsW5DRUzlm2APZJz-AXCOictagXJF1PPq4kJ1WJRDtFMk2YRBJHlgKPUgBCm2V2jKpZyEf1Wgc7lKW8XQ9RomQKQiPDvw4i1ULWCO3301ZXfL0jjVFJwwEZFPY7kCtrN2WGGyr8smhfBAdqd2sTkLos6u2Ea3Hq-YUGy62NYUvnIoNG2hfLS8M0b4KKBjDnUysG3-8Bw05ADUzABpGGiU8g1cZxRRrganrsmTP8VdT-CEqSfFZ0Zmx9C9nA0Hg1JY7jKP1JXL8/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > | > > https://secure-web.cisco.com/1CAOziRIN8KtCy0GPCqlXsJRzah1K2gGcYuqfN3Qclu8hVOtNzTFxNGgsW5DRUzlm2APZJz-AXCOictagXJF1PPq4kJ1WJRDtFMk2YRBJHlgKPUgBCm2V2jKpZyEf1Wgc7lKW8XQ9RomQKQiPDvw4i1ULWCO3301ZXfL0jjVFJwwEZFPY7kCtrN2WGGyr8smhfBAdqd2sTkLos6u2Ea3Hq-YUGy62NYUvnIoNG2hfLS8M0b4KKBjDnUysG3-8Bw05ADUzABpGGiU8g1cZxRRrganrsmTP8VdT-CEqSfFZ0Zmx9C9nA0Hg1JY7jKP1JXL8/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > ] ] > > > > > The information in this email is intended only for the...{{dropped:10}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
