I do not see the changes pushed to git.bioconductor.org. Please check to make sure the remotes are set up correctly and there were no ERROR's when doing a git push.
The release branch will NOT update automatically. You need to push the same changes to the RELEASE_ 3 _ 19 branch of git.bioconductor.org:packages/SVMDO Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of MUSTAFA ERHAN �ZER via Bioc-devel <bioc-devel@r-project.org> Sent: Monday, August 26, 2024 3:12 AM To: Vincent Carey <st...@channing.harvard.edu> Cc: bioc-devel <bioc-devel@r-project.org>; Bioc-devel <bioc-devel-boun...@r-project.org> Subject: Re: [Bioc-devel] Error in SVMDO Package Good day, I updated the devel branch of the SVMDO package, but I have not see it in code.bioconductor.org yet. I did the update approximately 2 hours ago. How long does it take to appear? Is it also going to automatically update release version of 3.19? Sincerely, Kimden: "Vincent Carey" <st...@channing.harvard.edu> Kime: "MUSTAFA ERHAN �ZER" <erhanoze...@marun.edu.tr> Kk: "Bioc-devel" <bioc-devel-boun...@r-project.org>, "bioc-devel" <bioc-devel@r-project.org> G�nderilenler: 26 A�ustos Pazartesi 2024 1:03:14 Konu: Re: [Bioc-devel] Error in SVMDO Package On Sun, Aug 25, 2024 at 3:33 PM MUSTAFA ERHAN �ZER via Bioc-devel < [ mailto:bioc-devel@r-project.org | bioc-devel@r-project.org ] > wrote: Good day, The recent Multiple platform build/check report for BioC 3.19 of SVMDO package resulted in error for every platform. The error is " Error in `get_anno_data(ontology)`: ontology not supported yet... " The error essentially reports that "DO" is not a valid argument to enrichDO. SVMDO should use "HDO", I believe. BQ_BEGIN Is this a package related issue that is going to be fixed by itself? Sincerely, [[alternative HTML version deleted]] _______________________________________________ [ mailto:Bioc-devel@r-project.org | Bioc-devel@r-project.org ] mailing list [ https://secure-web.cisco.com/1CAOziRIN8KtCy0GPCqlXsJRzah1K2gGcYuqfN3Qclu8hVOtNzTFxNGgsW5DRUzlm2APZJz-AXCOictagXJF1PPq4kJ1WJRDtFMk2YRBJHlgKPUgBCm2V2jKpZyEf1Wgc7lKW8XQ9RomQKQiPDvw4i1ULWCO3301ZXfL0jjVFJwwEZFPY7kCtrN2WGGyr8smhfBAdqd2sTkLos6u2Ea3Hq-YUGy62NYUvnIoNG2hfLS8M0b4KKBjDnUysG3-8Bw05ADUzABpGGiU8g1cZxRRrganrsmTP8VdT-CEqSfFZ0Zmx9C9nA0Hg1JY7jKP1JXL8/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel | https://secure-web.cisco.com/1CAOziRIN8KtCy0GPCqlXsJRzah1K2gGcYuqfN3Qclu8hVOtNzTFxNGgsW5DRUzlm2APZJz-AXCOictagXJF1PPq4kJ1WJRDtFMk2YRBJHlgKPUgBCm2V2jKpZyEf1Wgc7lKW8XQ9RomQKQiPDvw4i1ULWCO3301ZXfL0jjVFJwwEZFPY7kCtrN2WGGyr8smhfBAdqd2sTkLos6u2Ea3Hq-YUGy62NYUvnIoNG2hfLS8M0b4KKBjDnUysG3-8Bw05ADUzABpGGiU8g1cZxRRrganrsmTP8VdT-CEqSfFZ0Zmx9C9nA0Hg1JY7jKP1JXL8/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel ] BQ_END The information in this email is intended only for the p...{{dropped:23}}
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