Hi Wanding,
A process cannot allocate more than 3Gb of memory on 32-bit Windows. See
my other post on this list for more information about this:
https://stat.ethz.ch/pipermail/bioc-devel/2021-November/018663.html
Cheers,
H.
On 22/11/2021 05:17, Zhou, Wanding wrote:
Hi,
Recently we are experience some memory issue on both development and release
(mostly Windows) that causes the sesame package build to fail. We are trying to
address it but it seems to run fine locally on our side.
This is the error on the development branch
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Error: processing vignette 'sesame.Rmd' failed with diagnostics:
C stack usage 7977908 is too close to the limit
And this is the error on the release branch
data = data.frame(estimate=c(runif(10, 0, 10)))
plotLollipop(data)
Error in grid.newpage() :
'Calloc' could not allocate memory (27541715 of 1 bytes)
Calls: <Anonymous> -> print.ggplot -> grid.newpage
Let me know if you are aware of something or have a clue. Any insight will be
super helpful!
Thanks!
Zoom link: https://us02web.zoom.us/j/4248839577
----
Wanding Zhou, Ph.D.
Assistant Professor
Office: CTRB 9050
3501 Civic Center Blvd
Philadelphia, PA 19104
Lab: https://zhou-lab.github.io/
Phone (o): (215) 590-0473
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