There is no need to do it in MulticoreParam as it will simply fork your master process and therefore inherit your global setting. I think the warning you get is due to a bug in RStudio, I hope they can fix it but it might not be that fast...
Best, Jiefei On Mon, Oct 25, 2021 at 8:16 PM Giulia Pais <giuliapa...@gmail.com> wrote: > > Sorry, my bad, I actually changed the code but for it work properly it is > mandatory to rebuild the package completely (not only loading it through > devtools). It seems to work for 1 function, I'll change the option export > global in all the code and rebuild it and see if it works. Do you know if it > is necessary also for MulticoreParam? It doesn't seem to be necessary and > when I previously set the option to TRUE I always got warning messages for > the stats package, that’s way we set it to FALSE. > Thank you so much for your help > > On 10/25/21, 13:58, "Jiefei Wang" <szwj...@gmail.com> wrote: > > I do not see it from the build report here: > > http://bioconductor.org/checkResults/devel/bioc-LATEST/ISAnalytics/riesling1-checksrc.html > > Can you please provide a reproducible example? It can be very helpful > to locate the issue > > On Mon, Oct 25, 2021 at 7:53 PM Giulia Pais <giuliapa...@gmail.com> wrote: > > > > I mean that trying to modify the code of one of the functions that > raises errors and setting the option "exportglobals = TRUE" on SnowParam, > somehow it still fails and says it doesn't find the function > "mandatory_is_vars()" which is a function exported by the package > > > > On 10/25/21, 13:49, "Jiefei Wang" <szwj...@gmail.com> wrote: > > > > What do you mean by "exported functions are invisible to SnowParam > > workers"? Please provide more details. If you call 'bplapply' with a > > function from your package, it should be visible to the worker. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
