Tried removing completely all DT calls but we�re still slightly above the limit. Is there no other way other than removing vignettes or files?
From: Vincent Carey <st...@channing.harvard.edu> Date: Thursday, September 23, 2021 at 15:51 To: Giulia Pais <giuliapa...@gmail.com> Cc: "Kern, Lori" <lori.sheph...@roswellpark.org>, Zuguang Gu <joker...@gmail.com>, "bioc-devel@r-project.org" <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] Issues with package size It seems to me the reason for the large vignette size is that you have significant DT::datatable rendering capabilities within your vignettes, and the tables are large. I would propose that you use subsets of the table content for the vignettes, and direct the reader who wants to search the entire table interactively, to run a function in the package that will produce the full table in datatable format. On Thu, Sep 23, 2021 at 8:56 AM Giulia Pais <giuliapa...@gmail.com<mailto:giuliapa...@gmail.com>> wrote: Hi Lori, It is mainly data and a couple of plots, no images. Even if there is very minimal data somehow we can�t obtain vignettes smaller than 1 MB. From: "Kern, Lori" <lori.sheph...@roswellpark.org> Date: Thursday, September 23, 2021 at 14:52 To: Zuguang Gu <joker...@gmail.com<mailto:joker...@gmail.com>>, Giulia Pais <giuliapa...@gmail.com<mailto:giuliapa...@gmail.com>> Cc: "bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>" <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] Issues with package size In generally, Bioconductor will always require at least one vignette automatically checked and that performs non trivial calls to package code. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org>> on behalf of Zuguang Gu <joker...@gmail.com<mailto:joker...@gmail.com>> Sent: Thursday, September 23, 2021 8:45 AM To: Giulia Pais <giuliapa...@gmail.com<mailto:giuliapa...@gmail.com>> Cc: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] Issues with package size Hi Giulia, I think it is ok to host the vignettes somewhere else. I have two packages of which the vignettes are hosted on GitHub Page. http://www.bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html https://www.bioconductor.org/packages/devel/bioc/html/cola.html But since now the vignettes are not automatically checked, you need to make sure every time you update your package, the vignettes can be successfully generated. Cheers, Zuguang On Thu, 23 Sept 2021 at 14:07, Giulia Pais <giuliapa...@gmail.com<mailto:giuliapa...@gmail.com>> wrote: > Hello, I�m the developer of the package ISAnalytics. > I�d like to ask if it is possible to have a file/vignette that links to > other documentation outside the package (like a GitHub wiki) since we have > issues with the maximum allowed package size due to vignette size, We would > like to maintain as much documentation as possible and we already tried to > reduce data included but it�s not sufficient. > Thanks in advance > Giulia Pais > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list > https://secure-web.cisco.com/1bVwVH2TSjLktt0qOqzdmtPQeyStFct50lyqYggqz0cWVZz5Nrl13NmfUZgC3uXfgqj0OAIUk0NpuvXaN4Sl8Y4RUv0VLrJI3zmz8Slm6fsVr-gGcVOy_bZL-9KWc0IqbhzJi4vfa7naMQ8TWtKOAnzqR6BWM0zUrhPVfh59QSaBIcwcztT6-chMXAfU01xkg057qask_cA8EduifzdqUaqRELZKrVd1l8wwioW7U8s8pa_FMzA6tEE5A_Ddl62UCFeMvxnXuQjkyvm1Yuh2hgZ9HDGeZOKg_ZgpmZXyI2OVInjnXlv4sCexb93Tkd5Ox/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://secure-web.cisco.com/1bVwVH2TSjLktt0qOqzdmtPQeyStFct50lyqYggqz0cWVZz5Nrl13NmfUZgC3uXfgqj0OAIUk0NpuvXaN4Sl8Y4RUv0VLrJI3zmz8Slm6fsVr-gGcVOy_bZL-9KWc0IqbhzJi4vfa7naMQ8TWtKOAnzqR6BWM0zUrhPVfh59QSaBIcwcztT6-chMXAfU01xkg057qask_cA8EduifzdqUaqRELZKrVd1l8wwioW7U8s8pa_FMzA6tEE5A_Ddl62UCFeMvxnXuQjkyvm1Yuh2hgZ9HDGeZOKg_ZgpmZXyI2OVInjnXlv4sCexb93Tkd5Ox/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. 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