It seems to me the reason for the large vignette size is that you have significant DT::datatable rendering capabilities within your vignettes, and the tables are large. I would propose that you use subsets of the table content for the vignettes, and direct the reader who wants to search the entire table interactively, to run a function in the package that will produce the full table in datatable format.
On Thu, Sep 23, 2021 at 8:56 AM Giulia Pais <giuliapa...@gmail.com> wrote: > Hi Lori, > It is mainly data and a couple of plots, no images. Even if there is very > minimal data somehow we can’t obtain vignettes smaller than 1 MB. > > > From: "Kern, Lori" <lori.sheph...@roswellpark.org> > Date: Thursday, September 23, 2021 at 14:52 > To: Zuguang Gu <joker...@gmail.com>, Giulia Pais <giuliapa...@gmail.com> > Cc: "bioc-devel@r-project.org" <bioc-devel@r-project.org> > Subject: Re: [Bioc-devel] Issues with package size > > In generally, Bioconductor will always require at least one vignette > automatically checked and that performs non trivial calls to package code. > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > ________________________________ > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Zuguang > Gu <joker...@gmail.com> > Sent: Thursday, September 23, 2021 8:45 AM > To: Giulia Pais <giuliapa...@gmail.com> > Cc: bioc-devel@r-project.org <bioc-devel@r-project.org> > Subject: Re: [Bioc-devel] Issues with package size > > Hi Giulia, > > I think it is ok to host the vignettes somewhere else. I have two packages > of which the vignettes are hosted on GitHub Page. > > http://www.bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html > https://www.bioconductor.org/packages/devel/bioc/html/cola.html > > But since now the vignettes are not automatically checked, you need to make > sure every time you update your package, the vignettes can be successfully > generated. > > Cheers, > Zuguang > > > On Thu, 23 Sept 2021 at 14:07, Giulia Pais <giuliapa...@gmail.com> wrote: > > > Hello, I’m the developer of the package ISAnalytics. > > I’d like to ask if it is possible to have a file/vignette that links to > > other documentation outside the package (like a GitHub wiki) since we > have > > issues with the maximum allowed package size due to vignette size, We > would > > like to maintain as much documentation as possible and we already tried > to > > reduce data included but it’s not sufficient. > > Thanks in advance > > Giulia Pais > > > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > > https://secure-web.cisco.com/1bVwVH2TSjLktt0qOqzdmtPQeyStFct50lyqYggqz0cWVZz5Nrl13NmfUZgC3uXfgqj0OAIUk0NpuvXaN4Sl8Y4RUv0VLrJI3zmz8Slm6fsVr-gGcVOy_bZL-9KWc0IqbhzJi4vfa7naMQ8TWtKOAnzqR6BWM0zUrhPVfh59QSaBIcwcztT6-chMXAfU01xkg057qask_cA8EduifzdqUaqRELZKrVd1l8wwioW7U8s8pa_FMzA6tEE5A_Ddl62UCFeMvxnXuQjkyvm1Yuh2hgZ9HDGeZOKg_ZgpmZXyI2OVInjnXlv4sCexb93Tkd5Ox/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1bVwVH2TSjLktt0qOqzdmtPQeyStFct50lyqYggqz0cWVZz5Nrl13NmfUZgC3uXfgqj0OAIUk0NpuvXaN4Sl8Y4RUv0VLrJI3zmz8Slm6fsVr-gGcVOy_bZL-9KWc0IqbhzJi4vfa7naMQ8TWtKOAnzqR6BWM0zUrhPVfh59QSaBIcwcztT6-chMXAfU01xkg057qask_cA8EduifzdqUaqRELZKrVd1l8wwioW7U8s8pa_FMzA6tEE5A_Ddl62UCFeMvxnXuQjkyvm1Yuh2hgZ9HDGeZOKg_ZgpmZXyI2OVInjnXlv4sCexb93Tkd5Ox/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- The information in this e-mail is intended only for the ...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
