Dear Lori, Thank you very much for explaining to me what exactly happened. I have made the appropriate changes and fixed the issue.
Thank you, Eleni On Mon, Apr 19, 2021, 9:21 AM Kern, Lori <lori.sheph...@roswellpark.org> wrote: > Even though you did not make any changes to your package, a dependency > you use has changed. This currently requires attention by you (and any > other package / package maintainer affected) to make appropriate changes in > your package code and to push up to bioconductor.org > > The changes comes from an update in CRAN package knitr version 1.33. See > https://github.com/yihui/knitr/issues/1864 regarding the change. > > The ERROR is very informative and following its advice by updating the > Suggest of the package DESCRIPTION should remedy. > > If your vignette is based on the vignette engine knitr::rmarkdown, you > have to declare the dependency on > rmarkdown, e.g., > > Suggests: rmarkdown > VignetteBuilder: knitr > > If your vignette is based on the vignette engine knitr::markdown, you have > to declare the dependency on > markdown, e.g., > > Suggests: markdown > VignetteBuilder: knitr > > For quick reference, here is a useful help page on fixing bugs in release > and devel for Bioconductor. > bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/ > > > We are exploring other options for fixing this issue since it affects > hundreds of Bioconductor package but currently if you would like to follow > the above instructions it is greatly appreciated. > > Cheers, > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of alan > murphy <alanmurp...@hotmail.com> > *Sent:* Saturday, April 17, 2021 4:52 AM > *To:* ELENI ADAM <eadam...@odu.edu> > *Cc:* bioc-devel@r-project.org <bioc-devel@r-project.org> > *Subject:* Re: [Bioc-devel] Error building package > > > _______________________________________________ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1wU9NHjSrv-PW4vXomr3nbTfLlNrpYcAdIXDKF9IJwD_30nfUqXWry9jLafvge770Btz8rqwoqcGM7vvaSr2phWVirmkMR_dDW4c9EA3ddTbEd7-sCu3xxR-_OFWI7jeYGomVtJk74L6CQbCQT2LNSSfboIU_Sxj7jvfmxbEeOTz-HRLJ3ZrBfzlRGSq8RooD1Pz3BkwnJXcQuPiMwg3s_O4B-Jvi6WO5rRjH5L_-ihzGePUJIZVZzOI8NAos9XPYOmHmvWjXJIZ3p_nCDcjnvtHOVJzHyE9jP7PV3b0VSz8WQMeRCs40fbaSM-3SPI86CcZRIzXyxjFgvbzMCUdSig/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
