Thank you very much, Hervé! On Wed, Mar 31, 2021 at 8:25 AM Hervé Pagès <hpages.on.git...@gmail.com> wrote:
> Hi Stian, > > I know I know, this thread is almost 1 year old. I had s sticker hanging > around to remind me about this, and, today, I spent the entire afternoon > looking into this, found the problem, and implemented a fix. > > Long story short: On our Mac builders, the png() device was using the > "Xlib" type by default. Problem is that png(type="Xlib") does not > support semi-transparency (and this seems to be the case on all Mac and > Linux systems). I changed this to use the "cairo" type by default (this > is the default on Linux). With this change, I was finally able to run 'R > CMD build chimeraviz' successfully on the machine. > > I also found out that this problem was also breaking the srnadiff package. > > We won't see the effect of that change on today's build report, but > hopefully we will on tomorrow's report. > > Cheers, > H. > > > On 4/23/20 11:33 PM, Stian Lågstad wrote: > > Thank you very much for the help so far! > > > > On Fri, Apr 24, 2020 at 8:08 AM Hervé Pagès <hpa...@fredhutch.org > > <mailto:hpa...@fredhutch.org>> wrote: > > > > OK, thanks testing that. This suggests that the problem is on our > > side... sigh! I will need to dig deeper into this. > > > > Best, > > H. > > > > > > On 4/23/20 22:57, Bemis, Kylie wrote: > > > Worked for me without errors or warnings: > > > > > > kuwisdelu@Eva-02-Dash Projects % R CMD build chimeraviz > > > * checking for file ‘chimeraviz/DESCRIPTION’ ... OK > > > * preparing ‘chimeraviz’: > > > * checking DESCRIPTION meta-information ... OK > > > * installing the package to build vignettes > > > * creating vignettes ... OK > > > * checking for LF line-endings in source and make files and shell > > scripts > > > * checking for empty or unneeded directories > > > Removed empty directory ‘chimeraviz/docker’ > > > * building ‘chimeraviz_1.13.8.tar.gz’ > > > > > > kuwisdelu@Eva-02-Dash Projects % R CMD INSTALL > > chimeraviz_1.13.8.tar.gz > > > * installing to library ‘/Users/kuwisdelu/Library/R/4.0/library’ > > > * installing *source* package ‘chimeraviz’ ... > > > ** using staged installation > > > ** R > > > ** inst > > > ** byte-compile and prepare package for lazy loading > > > ** help > > > *** installing help indices > > > ** building package indices > > > ** installing vignettes > > > ** testing if installed package can be loaded from temporary > location > > > ** testing if installed package can be loaded from final location > > > ** testing if installed package keeps a record of temporary > > installation > > > path > > > * DONE (chimeraviz) > > > > > > Under: > > > > > >> sessionInfo() > > > R version 4.0.0 RC (2020-04-18 r78249) > > > Platform: x86_64-apple-darwin17.0 (64-bit) > > > Running under: macOS Catalina 10.15.3 > > > > > > Matrix products: default > > > BLAS: > > > > > > /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib > > > LAPACK: > > > > > > /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib > > > > > > locale: > > > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > > > > > attached base packages: > > > [1] stats graphics grDevices utils datasets methods > base > > > > > > loaded via a namespace (and not attached): > > > [1] compiler_4.0.0 tools_4.0.0 > > > > > > The vignette looks okay as far as I can tell. > > > > > > -Kylie > > > > > > > > > > > > > > > > > > > > >> On Apr 24, 2020, at 1:40 AM, Hervé Pagès <hpa...@fredhutch.org > > <mailto:hpa...@fredhutch.org> > > >> <mailto:hpa...@fredhutch.org <mailto:hpa...@fredhutch.org>>> > wrote: > > >> > > >> Interesting indeed. Thanks for checking this. > > >> > > >> Even though I'm not sure what conclusion to draw from all this. > > >> > > >> Since you are on a Mac, can I ask you another big favor? Do you > > think > > >> you could run 'R CMD build' on chimeraviz and see if you can > > reproduce > > >> the error we see on the build report here: > > >> > > >> > > > https://nam05.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.11%2Fbioc-LATEST%2Fchimeraviz%2Fmachv2-buildsrc.html&data=02%7C01%7Ck.bemis%40northeastern.edu%7Ca50b7fbb03654f8b503208d7e811f4b5%7Ca8eec281aaa34daeac9b9a398b9215e7%7C0%7C0%7C637233036132939427&sdata=s9fJRfwSMO0UkPEwdmrW7mZhEM%2FgCOYtQm3HO12DknA%3D&reserved=0 > > < > https://urldefense.proofpoint.com/v2/url?u=https-3A__nam05.safelinks.protection.outlook.com_-3Furl-3Dhttps-253A-252F-252Fbioconductor.org-252FcheckResults-252F3.11-252Fbioc-2DLATEST-252Fchimeraviz-252Fmachv2-2Dbuildsrc.html-26amp-3Bdata-3D02-257C01-257Ck.bemis-2540northeastern.edu-257Ca50b7fbb03654f8b503208d7e811f4b5-257Ca8eec281aaa34daeac9b9a398b9215e7-257C0-257C0-257C637233036132939427-26amp-3Bsdata-3Ds9fJRfwSMO0UkPEwdmrW7mZhEM-252FgCOYtQm3HO12DknA-253D-26amp-3Breserved-3D0&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=spDwGebzwvYFmsfil8jbkf1ixWYz45Vu5uuTNE1srvo&s=Ctw0qHipP04y4qx-EQjnkqzp78H_pYbqbG_EiKD10Ck&e= > > > > > > >> > > < > https://urldefense.proofpoint.com/v2/url?u=https-3A__nam05.safelinks.protection.outlook.com_-3Furl-3Dhttps-253A-252F-252Fbioconductor.org-252FcheckResults-252F3.11-252Fbioc-2DLATEST-252Fchimeraviz-252Fmachv2-2Dbuildsrc.html-26amp-3Bdata-3D02-257C01-257Ck.bemis-2540northeastern.edu-257Ca50b7fbb03654f8b503208d7e811f4b5-257Ca8eec281aaa34daeac9b9a398b9215e7-257C0-257C0-257C637233036132939427-26amp-3Bsdata-3Ds9fJRfwSMO0UkPEwdmrW7mZhEM-252FgCOYtQm3HO12DknA-253D-26amp-3Breserved-3D0&d=DwMGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=ChvNTQebsUvVKYAGSEtFgFNOcwgSzxXYjQ69oO9oBM0&s=Rkoe-LwrUsVZyqv9zyv00KH__7fWXhf-n8-ZTmYFdP4&e= > > < > https://urldefense.proofpoint.com/v2/url?u=https-3A__nam05.safelinks.protection.outlook.com_-3Furl-3Dhttps-253A-252F-252Fbioconductor.org-252FcheckResults-252F3.11-252Fbioc-2DLATEST-252Fchimeraviz-252Fmachv2-2Dbuildsrc.html-26amp-3Bdata-3D02-257C01-257Ck.bemis-2540northeastern.edu-257Ca50b7fbb03654f8b503208d7e811f4b5-257Ca8eec281aaa34daeac9b9a398b9215e7-257C0-257C0-257C637233036132939427-26amp-3Bsdata-3Ds9fJRfwSMO0UkPEwdmrW7mZhEM-252FgCOYtQm3HO12DknA-253D-26amp-3Breserved-3D0&d=DwMGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=ChvNTQebsUvVKYAGSEtFgFNOcwgSzxXYjQ69oO9oBM0&s=Rkoe-LwrUsVZyqv9zyv00KH__7fWXhf-n8-ZTmYFdP4&e= > >> > > >> > > >> Get the source with > > >> > > >> git clone > > >> > > > https://nam05.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgit.bioconductor.org%2Fpackages%2Fchimeraviz&data=02%7C01%7Ck.bemis%40northeastern.edu%7Ca50b7fbb03654f8b503208d7e811f4b5%7Ca8eec281aaa34daeac9b9a398b9215e7%7C0%7C0%7C637233036132939427&sdata=cTfgpg28qU2zPXAZn2DZs7k8TQKk290wYyj2vjD6Khw%3D&reserved=0 > > < > https://urldefense.proofpoint.com/v2/url?u=https-3A__nam05.safelinks.protection.outlook.com_-3Furl-3Dhttps-253A-252F-252Fgit.bioconductor.org-252Fpackages-252Fchimeraviz-26amp-3Bdata-3D02-257C01-257Ck.bemis-2540northeastern.edu-257Ca50b7fbb03654f8b503208d7e811f4b5-257Ca8eec281aaa34daeac9b9a398b9215e7-257C0-257C0-257C637233036132939427-26amp-3Bsdata-3DcTfgpg28qU2zPXAZn2DZs7k8TQKk290wYyj2vjD6Khw-253D-26amp-3Breserved-3D0&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=spDwGebzwvYFmsfil8jbkf1ixWYz45Vu5uuTNE1srvo&s=AXA8I4gFAwdgs59Y6c4xB0rKpoJxZBRSmj7CF6rk8oY&e= > > > > >> > > >> Thanks, > > >> H. > > >> > > >> > > >> On 4/23/20 21:55, Bemis, Kylie wrote: > > >>> That’s interesting. I did: > > >>>> BiocManager::install("Cardinal", type="mac.binary.el-capitan”) > > >>>> browseVignettes("Cardinal") > > >>> from R 3.6.3, and the figures using transparency in the > vignettes > > >>> look fine to me. > > >>> When I use X11() to reproduce the warning locally, the > transparent > > >>> colors get truncated, so that the higher-alpha colors appear > > opaque > > >>> and the lower-alpha colors don’t appear at all. > > >>> However, in the merida1 vignette, the figures appear as I’d > > normally > > >>> get form quartz() or pdf() locally, which don’t produce > > warnings for > > >>> me on macOS 10.15.3. > > >>> -Kylie > > >>>> On Apr 24, 2020, at 12:39 AM, Hervé Pagès > > <hpa...@fredhutch.org <mailto:hpa...@fredhutch.org> > > >>>> <mailto:hpa...@fredhutch.org <mailto:hpa...@fredhutch.org>>> > > wrote: > > >>>> > > >>>> Hi Kylie, > > >>>> > > >>>> I get the warnings on merida1 for Cardinal too e.g. when I run > > the > > >>>> code in the Cardinal-2-stats vignette: > > >>>> > > >>>> merida1:vignettes biocbuild$ pwd > > >>>> /Users/biocbuild/bbs-3.10-bioc/meat/Cardinal/vignettes > > >>>> > > >>>> merida1:vignettes biocbuild$ R CMD Stangle > Cardinal-2-stats.Rmd > > >>>> Output file: Cardinal-2-stats.R > > >>>> > > >>>> merida1:vignettes biocbuild$ R > > >>>> ... > > >>>> > source("Cardinal-2-stats.R", echo=TRUE) > > >>>> ... > > >>>> There were 14 warnings (use warnings() to see them) > > >>>> > warnings() > > >>>> Warning messages: > > >>>> 1: In rect(left, top, r, b, angle = angle, density = > > density, ... : > > >>>> semi-transparency is not supported on this device: > reported > > >>>> only once per page > > >>>> 2: In rect(left, top, r, b, angle = angle, density = > > density, ... : > > >>>> semi-transparency is not supported on this device: > reported > > >>>> only once per page > > >>>> ... > > >>>> > > >>>> The thing is that 'R CMD build' does not display warnings, > unless > > >>>> there is an error. Maybe that's why you've never seen them > > until now > > >>>> because of the error you have on machv2 (and other platforms). > > >>>> > > >>>> It's be interesting to know if the plots included in the > vignette > > >>>> are actually OK. Have you checked them? You can do this by > > >>>> installing the Mac binary for Cardinal in BioC 3.10 with: > > >>>> > > >>>> BiocManager::install("Cardinal", > type="mac.el-capitan.binary") > > >>>> > > >>>> (make sure you do this in R 3.6). This will install the > vignette > > >>>> generated on merida1. Then open the vignette via > > >>>> browseVignettes("Cardinal") and check the plots. Do they look > ok > > >>>> despite the "semi-transparency" problem? > > >>>> > > >>>> Thanks, > > >>>> H. > > >>>> > > >>>> > > >>>> > > >>>> On 4/23/20 20:39, Bemis, Kylie wrote: > > >>>>> I’m now seeing the same "semi-transparency" error on my Mac > > builds > > >>>>> for Cardinal. My vignettes have used transparency for years > > now and > > >>>>> this has never been an issue before (on merida1 or otherwise). > > >>>>> I can reproduce the error locally with an X11() device, but > not > > >>>>> with quartz(), png(), png(), etc. > > >>>>> (Note that my Cardinal 2.5.9 builds are currently failing due > > to an > > >>>>> unrelated issue that I’ve since fixed, but the build system > > hasn’t > > >>>>> gotten to 2.5.11 yet.) > > >>>>> ~~~ > > >>>>> Kylie Ariel Bemis (she/her) > > >>>>> Khoury College of Computer Sciences > > >>>>> Northeastern University > > >>>>> kuwisdelu.github.io > > < > https://urldefense.proofpoint.com/v2/url?u=http-3A__kuwisdelu.github.io&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=spDwGebzwvYFmsfil8jbkf1ixWYz45Vu5uuTNE1srvo&s=aHFesaMDD1xg6qfVuQHWI8uVD0SjqQYShilwF3LXitI&e= > > > > > > >>>>> > > < > 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> >>> > > >>>>>> On Apr 23, 2020, at 11:28 PM, Hervé Pagès > > <hpa...@fredhutch.org <mailto:hpa...@fredhutch.org> > > >>>>>> <mailto:hpa...@fredhutch.org <mailto:hpa...@fredhutch.org>> > > <mailto:hpa...@fredhutch.org <mailto:hpa...@fredhutch.org>>> wrote: > > >>>>>> > > >>>>>> Ok so I'm changing my mind about this. I suspect that the > > error is > > >>>>>> actually related to the warning. The error comes from the > > magick > > >>>>>> package (a wrapper around the ImageMagick software) and it > > >>>>>> indicates a failure to crop an empty image. It can easily be > > >>>>>> reproduced with: > > >>>>>> > > >>>>>> ## Generate an empty image. > > >>>>>> png("myplot.png", bg="transparent") > > >>>>>> plot.new() > > >>>>>> dev.off() > > >>>>>> > > >>>>>> ## Try to crop it. > > >>>>>> magick::image_trim(magick::image_read("myplot.png")) > > >>>>>> # Error in magick_image_trim(image, fuzz) : > > >>>>>> # R: GeometryDoesNotContainImage > > `/Users/biocbuild/myplot.png' > > >>>>>> @ # warning/attribute.c/GetImageBoundingBox/247 > > >>>>>> > > >>>>>> So I suspect that what happens is that the images generated > > on Mac > > >>>>>> by the code in the vignette are empty (because of the > > >>>>>> semi-transparency problem on Mac) which would explain why > later > > >>>>>> knitr fails to crop them (it uses magick::image_trim() for > > that). > > >>>>>> > > >>>>>> I don't exactly understand why we wouldn't have seen the > > problem > > >>>>>> on merida1 though (same version of knitr (1.28) and magick > > (2.3) > > >>>>>> on both machines) but it seems that chimeraviz has changed > > >>>>>> significantly between BioC 3.10 and 3.11. Did you start using > > >>>>>> semi-transparency recently in your plots? > > >>>>>> > > >>>>>> Best, > > >>>>>> H. > > >>>>>> > > >>>>>> > > >>>>>> On 4/23/20 19:42, Hervé Pagès wrote: > > >>>>>>> Hi Stian, > > >>>>>>> I went on machv2 and gave this a shot. I can reproduce the > > >>>>>>> GeometryDoesNotContainImage error in an interactive > session. I > > >>>>>>> don't have an answer yet but I was curious about the > > >>>>>>> "semi-transparency is not supported on this device" warning > > and > > >>>>>>> was wondering if it could somehow be related with the error. > > >>>>>>> It turns out that the warning is actually easy to reproduce > > on a > > >>>>>>> Mac with something like this: > > >>>>>>> plot.new() > > >>>>>>> lines(c(0.1, 0.22), c(0.5, 0.44), type = "l", lwd = 1, col = > > >>>>>>> "#FF000080") > > >>>>>>> I think that the 4th byte (80) in the color specification > > >>>>>>> ("#FF000080") is the level of transparency. > > >>>>>>> I can get this warning on machv2 **and** merida1. Some > > googling > > >>>>>>> indicates that this is a pretty common warning on Mac. > > Since we > > >>>>>>> don't get the vignette error on merida1 I think it's > unlikely > > >>>>>>> that the warning is related to the error. > > >>>>>>> I'll keep investigating the GeometryDoesNotContainImage > > error... > > >>>>>>> H. > > >>>>>>> On 4/22/20 01:59, Stian Lågstad wrote: > > >>>>>>>> I'm still unable to reproduce this error on my end. If > anyone > > >>>>>>>> with a mac > > >>>>>>>> could try building locally I would be very grateful. > Thanks. > > >>>>>>>> > > >>>>>>>> On Sat, Apr 18, 2020 at 4:06 PM Stian Lågstad > > >>>>>>>> <stianlags...@gmail.com <mailto:stianlags...@gmail.com> > > <mailto:stianlags...@gmail.com <mailto:stianlags...@gmail.com>> > > >>>>>>>> <mailto:stianlags...@gmail.com > > <mailto:stianlags...@gmail.com>>> > > >>>>>>>> wrote: > > >>>>>>>> > > >>>>>>>>> Hi, > > >>>>>>>>> > > >>>>>>>>> I'm haven't been able to figure out this error for the > > latest > > >>>>>>>>> machv2 build > > >>>>>>>>> for chimeraviz: > > >>>>>>>>> > > >>>>>>>>> ``` > > >>>>>>>>> Warning in doTryCatch(return(expr), name, parentenv, > > handler) : > > >>>>>>>>> semi-transparency is not supported on this device: > reported > > >>>>>>>>> only once > > >>>>>>>>> per page > > >>>>>>>>> Quitting from lines 108-126 (chimeraviz-vignette.Rmd) > > >>>>>>>>> Error: processing vignette 'chimeraviz-vignette.Rmd' > > failed with > > >>>>>>>>> diagnostics: > > >>>>>>>>> R: GeometryDoesNotContainImage > > >>>>>>>>> > > > > `/private/tmp/RtmpdBrrvk/Rbuild9ed5154894cc/chimeraviz/vignettes/chimeraviz-vignette_files/figure-html/unnamed-chunk-7-1.png' > > >>>>>>>>> @ warning/attribute.c/GetImageBoundingBox/247 > > >>>>>>>>> --- failed re-building ‘chimeraviz-vignette.Rmd’ > > >>>>>>>>> ``` > > >>>>>>>>> > > >>>>>>>>> The build in question: > > >>>>>>>>> > > > 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> >> > > > > >>>>>>>>> > > < > 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> > > > > > >>>>>>>>> > > < > 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> >>> > > >>>>>>>>> > > >>>>>>>>> If anyone has seen something like this before then I'd > > >>>>>>>>> appreciate some > > >>>>>>>>> help. Thank you! > > >>>>>>>>> > > >>>>>>>>> -- > > >>>>>>>>> Stian Lågstad > > >>>>>>>>> +47 41 80 80 25 > > >>>>>>>>> > > >>>>>>>> > > >>>>>>>> > > >>>>>> > > >>>>>> -- > > >>>>>> Hervé Pagès > > >>>>>> > > >>>>>> Program in Computational Biology > > >>>>>> Division of Public Health Sciences > > >>>>>> Fred Hutchinson Cancer Research Center > > >>>>>> 1100 Fairview Ave. N, M1-B514 > > >>>>>> P.O. Box 19024 > > >>>>>> Seattle, WA 98109-1024 > > >>>>>> > > >>>>>> E-mail:hpa...@fredhutch.org > > <mailto:e-mail%3ahpa...@fredhutch.org> <mailto:hpa...@fredhutch.org > > <mailto:hpa...@fredhutch.org>> > > >>>>>> <mailto:hpa...@fredhutch.org <mailto:hpa...@fredhutch.org>> > > >>>>>> Phone: (206) 667-5791 > > >>>>>> Fax: (206) 667-1319 > > >>>>>> > > >>>>>> _______________________________________________ > > >>>>>> Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org> > > <mailto:Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org>> > > >>>>>> <mailto:Bioc-devel@r-project.org > > <mailto:Bioc-devel@r-project.org>>mailing list > > >>>>>> > > > https://nam05.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel&data=02%7C01%7Ck.bemis%40northeastern.edu%7Ca50b7fbb03654f8b503208d7e811f4b5%7Ca8eec281aaa34daeac9b9a398b9215e7%7C0%7C0%7C637233036132949421&sdata=Bdf8dvgaOBLd7EvbwojiUrB1cuLxzLq4FoIqWHj6aKA%3D&reserved=0 > > < > https://urldefense.proofpoint.com/v2/url?u=https-3A__nam05.safelinks.protection.outlook.com_-3Furl-3Dhttps-253A-252F-252Fstat.ethz.ch-252Fmailman-252Flistinfo-252Fbioc-2Ddevel-26amp-3Bdata-3D02-257C01-257Ck.bemis-2540northeastern.edu-257Ca50b7fbb03654f8b503208d7e811f4b5-257Ca8eec281aaa34daeac9b9a398b9215e7-257C0-257C0-257C637233036132949421-26amp-3Bsdata-3DBdf8dvgaOBLd7EvbwojiUrB1cuLxzLq4FoIqWHj6aKA-253D-26amp-3Breserved-3D0&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=spDwGebzwvYFmsfil8jbkf1ixWYz45Vu5uuTNE1srvo&s=sf_oqqXGOjYWrVP2lvkzrXwYssGSxkNujZo9hMlHL3A&e= > > > > > > >>>>>> > > < > 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https://urldefense.proofpoint.com/v2/url?u=https-3A__nam05.safelinks.protection.outlook.com_-3Furl-3Dhttps-253A-252F-252Furldefense.proofpoint.com-252Fv2-252Furl-253Fu-253Dhttps-2D3A-5F-5Fnam05.safelinks.protection.outlook.com-5F-2D3Furl-2D3Dhttps-2D253A-2D252F-2D252Fstat.ethz.ch-2D252Fmailman-2D252Flistinfo-2D252Fbioc-2D2Ddevel-2D26amp-2D3Bdata-2D3D02-2D257C01-2D257Ck.bemis-2D2540northeastern.edu-2D257C557e92d7107a41f63ec208d7e8098af2-2D257Ca8eec281aaa34daeac9b9a398b9215e7-2D257C0-2D257C0-2D257C637233000008658074-2D26amp-2D3Bsdata-2D3DcvG4Wy-2D252Fl-2D252BP5pSYfwgdDJiHwZwvlTGBbKmFFSJoruaMg-2D253D-2D26amp-2D3Breserved-2D3D0-2526d-253DDwMGaQ-2526c-253DeRAMFD45gAfqt84VtBcfhQ-2526r-253DBK7q3XeAvimeWdGbWY-5FwJYbW0WYiZvSXAJJKaaPhzWA-2526m-253DCO4n-5F-5FSJ6oQxnPyEFpNoDuHw2Pa0aC-5FCznlpINGGORQ-2526s-253D4og1ORz-2D6-5FeQYm-2DM4A52k-5Fq-2DzwqtsZzzQd1ZKgDmQ9o-2526e-253D-26amp-3Bdata-3D02-257C01-257Ck.bemis-2540northeastern.edu-257Ca50b7fbb03654f8b503208d7e811f4b5-257Ca8eec281aaa34daeac9b9a398b9215e7-257C0-257C0-257C637233036132959412-26amp-3Bsdata-3DOtPn85TZoVi80MjQRWODH4-252FHvfMS53mg9byP0DMg8W0-253D-26amp-3Breserved-3D0&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=spDwGebzwvYFmsfil8jbkf1ixWYz45Vu5uuTNE1srvo&s=7oAkWLXDKn_jTWvmd9hBbQvbCInz8emWYaXlmzQRqSY&e= > >> > > > > >>>>>> > > < > https://nam05.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__nam05.safelinks.protection.outlook.com_-3Furl-3Dhttps-253A-252F-252Fstat.ethz.ch-252Fmailman-252Flistinfo-252Fbioc-2Ddevel-26amp-3Bdata-3D02-257C01-257Ck.bemis-2540northeastern.edu-257C0fefe5ade3994ca1943e08d7e7ff9084-257Ca8eec281aaa34daeac9b9a398b9215e7-257C0-257C0-257C637232957151727562-26amp-3Bsdata-3D-252BSIWViTvvcbrxJdXzw0IobmTldrBgK4DNLz-252F-252B2QJb-252FI-253D-26amp-3Breserved-3D0%26d%3DDwMGaQ%26c%3DeRAMFD45gAfqt84VtBcfhQ%26r%3DBK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA%26m%3DiIfSQOsSomvKm_1GHwSPKYxnfvicYz3rNyk04PTXhxU%26s%3DC9R31cXoa76n1W0GH-SVyVxgikFTCUbcJ9kdZqLu1-g%26e%3D&data=02%7C01%7Ck.bemis%40northeastern.edu%7Ca50b7fbb03654f8b503208d7e811f4b5%7Ca8eec281aaa34daeac9b9a398b9215e7%7C0%7C0%7C637233036132959412&sdata=F5tQarKC%2B3TgOvA2eHlKKycL5pb5a4X879efzDBm7R4%3D&reserved=0 > > < > 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> > > > > > >>>>>> > > < > 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> >>> > > >>>> > > >>>> -- > > >>>> Hervé Pagès > > >>>> > > >>>> Program in Computational Biology > > >>>> Division of Public Health Sciences > > >>>> Fred Hutchinson Cancer Research Center > > >>>> 1100 Fairview Ave. N, M1-B514 > > >>>> P.O. Box 19024 > > >>>> Seattle, WA 98109-1024 > > >>>> > > >>>> E-mail: hpa...@fredhutch.org <mailto:hpa...@fredhutch.org> > > <mailto:hpa...@fredhutch.org <mailto:hpa...@fredhutch.org>> > > >>>> Phone: (206) 667-5791 > > >>>> Fax: (206) 667-1319 > > >> > > >> -- > > >> Hervé Pagès > > >> > > >> Program in Computational Biology > > >> Division of Public Health Sciences > > >> Fred Hutchinson Cancer Research Center > > >> 1100 Fairview Ave. N, M1-B514 > > >> P.O. Box 19024 > > >> Seattle, WA 98109-1024 > > >> > > >> E-mail: hpa...@fredhutch.org <mailto:hpa...@fredhutch.org> > > >> Phone: (206) 667-5791 > > >> Fax: (206) 667-1319 > > > > > > > -- > > Hervé Pagès > > > > Program in Computational Biology > > Division of Public Health Sciences > > Fred Hutchinson Cancer Research Center > > 1100 Fairview Ave. N, M1-B514 > > P.O. Box 19024 > > Seattle, WA 98109-1024 > > > > E-mail: hpa...@fredhutch.org <mailto:hpa...@fredhutch.org> > > Phone: (206) 667-5791 > > Fax: (206) 667-1319 > > > > > > > > -- > > Stian Lågstad > > +47 41 80 80 25 > > -- > Hervé Pagès > > Bioconductor Core Team > hpages.on.git...@gmail.com > -- Stian Lågstad +47 41 80 80 25 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
