Hi Robert, Kozo, Thank you both for your responses!
I’ve now set up a testable tryCatch for my Cytoscape-using function that returns NULL on connection fail error, rather than stopping the function completely. Catherine > On Mar 6, 2021, at 1:12 PM, Kozo Nishida <knish...@riken.jp> wrote: > > EXTERNAL EMAIL: > > Hi Catherine, > > As far as I know, it is impossible. > See the comments from Martin Morgan and Paul Shannon below > https://github.com/Bioconductor/Contributions/issues/1513#issuecomment-644113558 > > I am maintaining a package for Cytoscape workflow (called > transomics2cytoscape). > I test it only on the local Desktop environment, not on the bioc builders. > > RCy3 is also tested only on the local Desktop environment, not on the > bioc builders. > > I think that your fedup package can only be tested locally . > (about the functions using Cytoscape.) > > Kozo > > -- > Kozo Nishida > knish...@riken.jp > > Laboratory for Biologically Inspired Computing > 6-2-3, Furuedai, Suita, Osaka 565-0874, JAPAN > RIKEN Center for Biosystems Dynamics Research > > On Sat, Mar 6, 2021 at 8:36 AM Catherine Ross > <catherinem.r...@mail.utoronto.ca> wrote: >> >> Hi bioc-devel, >> >> My package contains a function that requires Cytoscape. >> For this function to run, I need to have Cytoscape installed and open on my >> computer. >> https://github.com/rosscm/fedup/blob/main/R/femap.R >> >> This poses an issue when attempting to test the function since I can’t >> control Cytoscape on the bioc builders, so I can’t test the function at all. >> >> Is it possible to have Cytoscape installed on the builders to be able to run >> such tests? >> >> Catherine >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
